Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq407 111 6e-19 seq355 102 3e-16 >seq407 Length=246863 Score = 111 bits (122), Expect = 6e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || || || |||| || |||||||| |||||||| || || || ||| Sbjct 33777 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCT 33836 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || |||| || ||||| || |||||||| |||||||||||||| Sbjct 33837 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 33896 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||||| || ||||| | || ||||||||||| ||||| | ||| | | || || || Sbjct 33897 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 33956 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| | || |||||| Sbjct 33957 ATCCAAAAGGAGTCTACCCTTCAC 33980 Score = 105 bits (116), Expect = 3e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || ||||| ||||| ||||| || ||| ||| Sbjct 33270 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 33329 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | |||| || || ||||| ||||| || || || ||||| || Sbjct 33330 GATACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 33389 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || || || |||||| | || || ||||||||||| || ||||| | | || || ||| Sbjct 33390 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAT 33449 Query 391230 ATTGATAAGGA 391240 || | ||||| Sbjct 33450 ATCCAAAAGGA 33460 Score = 91.5 bits (100), Expect = 6e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || ||||| ||||| |||||||| || || || || Sbjct 32990 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 33049 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||| || | | || || || || || ||||| || || |||||||| || Sbjct 33050 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 33109 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACT 391214 ||||| || || || | || || || ||||||||||| || ||| Sbjct 33110 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACT 33154 Score = 91.5 bits (100), Expect = 6e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 391071 CTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAACATTGAAGCTATTAAA 391130 || || ||||| || || ||||| || || ||||| |||| ||| || | || Sbjct 34079 CTTACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 34138 Query 391131 CAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGG 391190 || || ||||| ||||| || || || |||||||| ||||| | || ||| | || Sbjct 34139 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 34198 Query 391191 AAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGA 391240 ||||||||||||||||| ||||| | | ||||| |||||| | ||||| Sbjct 34199 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGA 34248 >seq355 Length=82685 Score = 102 bits (112), Expect = 3e-16 Identities = 243/366 (66%), Gaps = 11/366 (3%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 |||||||| ||||| || |||||||||||||| ||||| || || || || || || Sbjct 415 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTT 356 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| | || | | || || |||| || ||||| || ||||| || | ||||| Sbjct 355 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 296 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 || || || || || || || ||||| ||| | |||| || || || || || || Sbjct 295 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 236 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-ACAGA---AGaaaa 451479 ||||| || |||||| | || || || || | | ||||| | || || || Sbjct 235 CCTACTGCCGCTGCTATCGCTTACGGCCT-------TGACAAGAAGTCTGAGGGCGAGAA 183 Query 451480 aaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGA 451539 || |||| | || || ||||||| || ||| ||| ||| | | | ||||| Sbjct 182 GAACGTTTTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGA 123 Query 451540 AGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATAT 451599 || || | || || || ||||| ||| |||||| ||||| || || ||||| || | Sbjct 122 GGAGGGTATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTT 63 Query 451600 TGATAA 451605 ||| || Sbjct 62 TGACAA 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975704097651020