Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq57 95.1 9e-14 seq355 93.3 3e-13 seq181 86.0 5e-11 >seq57 Length=209335 Score = 95.1 bits (104), Expect = 9e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 518101 AAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 518160 ||||| |||||| || |||||||||| || || || || || || || | || Sbjct 190628 AAGAGAGACATCAAAAGTACCACCACCCAAGTCGAAGATGAGGACGTTTCGCTCCTCCTC 190569 Query 518161 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 518220 || | |||||||| || |||| ||| |||||||| ||||| |||||||| | | Sbjct 190568 GGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAGTAGGTTCGTTAATAATACGGAG 190509 Query 518221 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 || | |||||||||||| || || || |||||||| | | || |||||||| || Sbjct 190508 CACCTCAAGACCAGCAATGGCACCGGCGTCCTTAGTGGCGAGACGCTGAGAATCGTTGAA 190449 Query 518281 ATATGCAGGAAC 518292 || |||||||| Sbjct 190448 GTAGGCAGGAAC 190437 >seq355 Length=82685 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 518444 ATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 518501 || || || || ||||| | ||||| || | ||||| || || || ||||| | | Sbjct 534 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAACTTAC 591 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 || || || || || ||||| |||| ||| ||| ||||| |||||| |||||| | Sbjct 592 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGATTCT 651 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 | || ||||| || || || |||| | || | || | |||||||||||| ||||| | Sbjct 652 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 711 Query 518622 GATTACCTTGATCATTCGC 518640 |||| || ||||| || || Sbjct 712 GATTGCCCTGATCGTTGGC 730 >seq181 Length=40626 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 668846 AGATTAAGAGGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAACGTGTCGATATG 668905 || |||| ||| |||||||||||||| ||||| ||| |||||||||| |||||||| | Sbjct 19085 AGGTTAAAAGGAAAAGAAGGTCGTATGAGAGGTAATCTGATGGGAAAGCGTGTCGACTTT 19144 Query 668906 TCTGCACGTACAGTTATTACTTCTGATCCCAA 668937 || || || || |||||||| ||| ||||| Sbjct 19145 TCAGCGCGGACGGTTATTACCGGTGACCCCAA 19176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780794362838890