Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq355 185 1e-41 seq176 152 7e-32 seq57 141 1e-28 seq352 132 6e-26 seq90 84.2 3e-11 >seq355 Length=82685 Score = 185 bits (204), Expect = 1e-41 Identities = 258/359 (72%), Gaps = 2/359 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || |||||||| | ||| || || || ||||| || ||||| || |||||||| Sbjct 60 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 119 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | || | || ||||| || ||||||||||| ||||| || || | ||| Sbjct 120 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 179 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | ||| | || ||||| || || ||||| |||||||| || || || || || Sbjct 180 TTCTTCTCGCCCTCAGACTTCTTGTCAAGGCCGTAAGCGATAGCAGCGGCAGTAGGCTCG 239 Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || |||| || |||| | || || ||||| | | || || || || || || || Sbjct 240 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 298 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 ||| || ||||| |||||||| ||||| || || || || | | ||| | ||| || Sbjct 299 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACCAAG 358 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 || | || || | || ||||| || ||||||||||| || ||||||||||||| || Sbjct 359 GTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATCTCTTCAGGCG 417 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135 |||| |||||||| |||||||||||||||||| | || || ||||| || || || || | Sbjct 784 CAATGATTTCTACCCGGTCGTTTTGCCAGACGGCAACACAAGAATAGGTGGTGCCCAAGT 843 Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160 | |||||||| |||| ||||| || Sbjct 844 CGATACCGATAGCTTTTGTCATGTT 868 >seq176 Length=37993 Score = 152 bits (168), Expect = 7e-32 Identities = 708/1115 (63%), Gaps = 23/1115 (2%) Strand=Plus/Minus Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929 ||||||| ||| | ||||| ||||| ||| || || || || | | | |||||| | Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604 Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989 ||| || |||||||||||| || |||| || || | ||||| || || || |||| Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544 Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049 | || | || ||||||| || | || | || |||| | ||| | | || | Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484 Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109 | |||| ||||||||||| ||||||| ||| | |||| || ||||| || || ||| Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA--GTT 24426 Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167 | | | || ||| || |||| || || ||| | ||| |||||| Sbjct 24425 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAAC 24366 Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224 | || |||| | || || | || || || || || || ||| | || || Sbjct 24365 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGG--TCTAC 24309 Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284 | | || | || | || || |||||||| || || ||| || | | | | Sbjct 24308 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 24249 Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344 ||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| || Sbjct 24248 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 24189 Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404 ||| || || || ||||| || || ||| || ||||| |||| | | Sbjct 24188 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTC 24129 Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464 | || || ||||| || | ||| | | ||| || | | || | || Sbjct 24128 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 24069 Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524 ||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || || Sbjct 24068 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTC 24009 Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584 | ||||| | | | ||||| ||||||||||| || || |||||||| | ||| | Sbjct 24008 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 23949 Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642 ||||| | ||| | || ||||| ||| |||| |||| || | ||| || ||| Sbjct 23948 GATCCAGAGGGCGTAGAAAAGGTCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 23891 Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702 | | || | || || | | ||| |||||||| || || | ||||| || | | Sbjct 23890 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 23831 Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756 || | ||||| || |||| | || |||| || || | || || |||| Sbjct 23830 CC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 23774 Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816 | ||| ||||| ||||| | ||| ||||| || || ||| | || || ||| Sbjct 23773 AGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 23714 Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876 || | || ||||| ||| | |||||||| || || ||| ||| | ||||| Sbjct 23713 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 23654 Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936 || | |||||||| ||||| || || || ||||| | || | ||||| || ||| Sbjct 23653 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 23594 Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971 |||||||| |||| ||| ||||| || ||||| || Sbjct 23593 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq57 Length=209335 Score = 141 bits (156), Expect = 1e-28 Identities = 271/395 (69%), Gaps = 6/395 (2%) Strand=Plus/Minus Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390 ||||| | |||||||| || |||||||| || | || || || || | ||||| | | Sbjct 190828 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGAGCG 190769 Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450 | | || || || ||| || | || ||||| | |||||| |||||| Sbjct 190768 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 190709 Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510 | ||||| || |||||||| | || || || || || || || ||||| ||| Sbjct 190708 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 190649 Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568 | ||| || | |||| | | | || |||||||| ||||||||||||| ||| || | Sbjct 190648 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCAAAAGTACCACCACCCAAGTCGAAGA 190591 Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628 |||| ||||| || || || | |||| || |||||||| || ||||| || || | Sbjct 190590 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 190531 Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687 | ||||| ||||||||||| || || || || |||||||| | | || || || || Sbjct 190530 TAGGTTCGTTAATAATACGGAG-CACCTCAAGACCAGCAATGGCACCGGCGTCCTTAGTG 190472 Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722 || | || || |||||||| |||||||| || || Sbjct 190471 GCGAGACGCTGAGAATCGTTGAAGTAGGCAGGAAC 190437 >seq352 Length=69407 Score = 132 bits (146), Expect = 6e-26 Identities = 210/297 (71%), Gaps = 3/297 (1%) Strand=Plus/Minus Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||||| |||| | || | || ||||| || ||||||||||| ||||| || || | Sbjct 69403 CCTCCT-CAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAA 69345 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 |||||| | ||| | || ||||| || |||||||| |||||||| || || || || Sbjct 69344 ACGTTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGC 69285 Query 7634 TCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || || |||| || |||| | || || ||||| | | || || || || || || Sbjct 69284 TCGTTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTG 69226 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 ||||| || ||||| |||||||| ||||| || || || || | | ||| | ||| Sbjct 69225 ACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACC 69166 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || || | || || | || ||||| ||| |||| ||||| || || || ||||| Sbjct 69165 AAGGTAAGCCTCAGCAGTCTCCTTCATCTTGATAAGGACCATGGAAGAGATTTCTTC 69109 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/200 (71%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 || |||||| | | ||| | ||||| ||| | || |||| ||| |||||||| Sbjct 68991 ATGACCTTAAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 68932 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | ||||| || || ||||| ||||| | ||||||||||| |||||||| Sbjct 68931 CCAATCAATCGCTTGGCGTCGAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 68872 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || ||||| ||||| | || || | || | || |||||||| || || || ||| Sbjct 68871 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 68815 Query 8057 CGATTCCCTTGGTCGTTCGC 8076 || || || ||||||||||| Sbjct 68814 CGGTTACCCTGGTCGTTCGC 68795 >seq90 Length=50681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397 |||||||||||||| ||||| ||||||||||| || || || || | ||| || Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945 Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457 || || || || || |||||||| ||||| || | |||| | ||||| Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005 Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516 || |||||||| | ||||| ||||||||||| |||| | || || ||||| ||||| Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 43064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635128314374600