Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq355 185 1e-41
seq176 152 7e-32
seq57 141 1e-28
seq352 132 6e-26
seq90 84.2 3e-11
>seq355
Length=82685
Score = 185 bits (204), Expect = 1e-41
Identities = 258/359 (72%), Gaps = 2/359 (1%)
Strand=Plus/Plus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || ||||| || ||||||||
Sbjct 60 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 119
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | || | || ||||| || ||||||||||| ||||| || || | |||
Sbjct 120 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 179
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| | ||| | || ||||| || || ||||| |||||||| || || || || ||
Sbjct 180 TTCTTCTCGCCCTCAGACTTCTTGTCAAGGCCGTAAGCGATAGCAGCGGCAGTAGGCTCG 239
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || |||| || |||| | || || ||||| | | || || || || || || ||
Sbjct 240 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 298
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
||| || ||||| |||||||| ||||| || || || || | | ||| | ||| ||
Sbjct 299 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACCAAG 358
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814
|| | || || | || ||||| || ||||||||||| || ||||||||||||| ||
Sbjct 359 GTAAGCCTCAGCAGTCTCCTTCATCTTAGTAAGAACCATGGAAGAAATCTCTTCAGGCG 417
Score = 82.4 bits (90), Expect = 1e-10
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135
|||| |||||||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 784 CAATGATTTCTACCCGGTCGTTTTGCCAGACGGCAACACAAGAATAGGTGGTGCCCAAGT 843
Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160
| |||||||| |||| ||||| ||
Sbjct 844 CGATACCGATAGCTTTTGTCATGTT 868
>seq176
Length=37993
Score = 152 bits (168), Expect = 7e-32
Identities = 708/1115 (63%), Gaps = 23/1115 (2%)
Strand=Plus/Minus
Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929
||||||| ||| | ||||| ||||| ||| || || || || | | | |||||| |
Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604
Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989
||| || |||||||||||| || |||| || || | ||||| || || || ||||
Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544
Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049
| || | || ||||||| || | || | || |||| | ||| | | || |
Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484
Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109
| |||| ||||||||||| ||||||| ||| | |||| || ||||| || || |||
Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA--GTT 24426
Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167
| | | || ||| || |||| || || ||| | ||| ||||||
Sbjct 24425 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAAC 24366
Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224
| || |||| | || || | || || || || || || ||| | || ||
Sbjct 24365 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGG--TCTAC 24309
Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284
| | || | || | || || |||||||| || || ||| || | | | |
Sbjct 24308 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 24249
Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344
||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| ||
Sbjct 24248 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 24189
Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404
||| || || || ||||| || || ||| || ||||| |||| | |
Sbjct 24188 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTC 24129
Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464
| || || ||||| || | ||| | | ||| || | | || | ||
Sbjct 24128 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTC 24069
Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524
||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || ||
Sbjct 24068 GTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTC 24009
Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584
| ||||| | | | ||||| ||||||||||| || || |||||||| | ||| |
Sbjct 24008 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 23949
Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642
||||| | ||| | || ||||| ||| |||| |||| || | ||| || |||
Sbjct 23948 GATCCAGAGGGCGTAGAAAAGGTCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 23891
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
| | || | || || | | ||| |||||||| || || | ||||| || | |
Sbjct 23890 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 23831
Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756
|| | ||||| || |||| | || |||| || || | || || ||||
Sbjct 23830 CC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 23774
Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816
| ||| ||||| ||||| | ||| ||||| || || ||| | || || |||
Sbjct 23773 AGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 23714
Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876
|| | || ||||| ||| | |||||||| || || ||| ||| | |||||
Sbjct 23713 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 23654
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
|| | |||||||| ||||| || || || ||||| | || | ||||| || |||
Sbjct 23653 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 23594
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||||| |||| ||| ||||| || ||||| ||
Sbjct 23593 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq57
Length=209335
Score = 141 bits (156), Expect = 1e-28
Identities = 271/395 (69%), Gaps = 6/395 (2%)
Strand=Plus/Minus
Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390
||||| | |||||||| || |||||||| || | || || || || | ||||| | |
Sbjct 190828 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGAGCG 190769
Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450
| | || || || ||| || | || ||||| | |||||| ||||||
Sbjct 190768 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 190709
Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510
| ||||| || |||||||| | || || || || || || || ||||| |||
Sbjct 190708 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 190649
Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568
| ||| || | |||| | | | || |||||||| ||||||||||||| ||| || |
Sbjct 190648 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCAAAAGTACCACCACCCAAGTCGAAGA 190591
Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
|||| ||||| || || || | |||| || |||||||| || ||||| || || |
Sbjct 190590 TGAGGACGTTTCGCTCCTCCTCGGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 190531
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| ||||| ||||||||||| || || || || |||||||| | | || || || ||
Sbjct 190530 TAGGTTCGTTAATAATACGGAG-CACCTCAAGACCAGCAATGGCACCGGCGTCCTTAGTG 190472
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|| | || || |||||||| |||||||| || ||
Sbjct 190471 GCGAGACGCTGAGAATCGTTGAAGTAGGCAGGAAC 190437
>seq352
Length=69407
Score = 132 bits (146), Expect = 6e-26
Identities = 210/297 (71%), Gaps = 3/297 (1%)
Strand=Plus/Minus
Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573
|||||| |||| | || | || ||||| || ||||||||||| ||||| || || |
Sbjct 69403 CCTCCT-CAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAA 69345
Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633
|||||| | ||| | || ||||| || |||||||| |||||||| || || || ||
Sbjct 69344 ACGTTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGC 69285
Query 7634 TCATTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692
|| || || |||| || |||| | || || ||||| | | || || || || || ||
Sbjct 69284 TCGTTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTG 69226
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752
||||| || ||||| |||||||| ||||| || || || || | | ||| | |||
Sbjct 69225 ACGTTGAGAGTCGTTGAAGTAGGCGGGGACGGTAACAACGGCCTTGGAGACGGTGCCACC 69166
Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
|| || | || || | || ||||| ||| |||| ||||| || || || |||||
Sbjct 69165 AAGGTAAGCCTCAGCAGTCTCCTTCATCTTGATAAGGACCATGGAAGAGATTTCTTC 69109
Score = 93.3 bits (102), Expect = 5e-14
Identities = 141/200 (71%), Gaps = 3/200 (2%)
Strand=Plus/Minus
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| |||||| | | ||| | ||||| ||| | || |||| ||| ||||||||
Sbjct 68991 ATGACCTTAAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 68932
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || | ||||| || || ||||| ||||| | ||||||||||| ||||||||
Sbjct 68931 CCAATCAATCGCTTGGCGTCGAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 68872
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || || | || | || |||||||| || || || |||
Sbjct 68871 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 68815
Query 8057 CGATTCCCTTGGTCGTTCGC 8076
|| || || |||||||||||
Sbjct 68814 CGGTTACCCTGGTCGTTCGC 68795
>seq90
Length=50681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397
|||||||||||||| ||||| ||||||||||| || || || || | ||| ||
Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945
Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457
|| || || || || |||||||| ||||| || | |||| | |||||
Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCA 43005
Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516
|| |||||||| | ||||| ||||||||||| |||| | || || ||||| |||||
Sbjct 43006 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 43064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635128314374600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |