Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq176 178 2e-39 seq407 170 2e-37 seq90 102 1e-16 >seq176 Length=37993 Score = 178 bits (196), Expect = 2e-39 Identities = 722/1121 (64%), Gaps = 35/1121 (3%) Strand=Plus/Plus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| ||||| || ||||||||||||| || ||||| | || | ||| Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || |||| || |||| ||||||| ||||| || ||||| ||| Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 || |||||||| || | ||||| || || || | || || | ||| || || | Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 23736 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| |||||| | || | ||||| ||||| ||||| || | | |||||||||| | Sbjct 23737 GTACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 23796 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017 | || || |||||| ||| | |||| | || |||| |||||||||||| Sbjct 23797 GATACGTTGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 23853 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 23854 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 23913 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || || || || |||| ||| |||||||| | ||||| ||||||||| | || | Sbjct 23914 TACGAGCTCGTGACCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 23973 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 | ||| ||||| |||| | ||||| | | || || || || |||| | Sbjct 23974 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTAT 24033 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256 ||||| || |||||| || || | ||||| || | | | | | || | Sbjct 24034 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 24092 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || | ||| | || | | ||| || || ||| || |||||||||| || ||| Sbjct 24093 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGT 24151 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || || ||||| || || ||| ||| || |||||| | | ||| Sbjct 24152 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 24211 Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||||| ||| ||||||||||| |||||| |||| | | | ||||| Sbjct 24212 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 24268 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491 ||||| ||||| || || || | ||||| || | || || | || || | Sbjct 24269 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCG 24327 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| | Sbjct 24328 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTCGACACTG 24387 Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | || | || | || || || |||| || || || || || ||| | || | Sbjct 24388 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 24444 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 | || ||||||| |||||||| |||||||| || | ||||| |||| | | Sbjct 24445 GACCTGTTGGTCTTGGTGTCCAGGGTCTCGCCGACGCTTTCATGGCCCTTCGCATGCCGT 24504 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || |||| || || | |||| ||||| | || || ||||| || |||||||| | Sbjct 24505 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATATCACGCGG 24564 Query 112729 CTCTTGAGGCG-AGTTCGGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGG 112786 | ||||||||| | || | ||| | || ||| |||| | |||||| | | || || Sbjct 24565 CGCTTGAGGCGTCATGCGAACTTGCCGAAGAGTT--TGGTACCTATGAATCTTACGAAGG 24622 Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 |||||| ||| | || | ||||| | || ||||||| Sbjct 24623 TTCTCCCATTTCTAAGGGTATCCTTCAGTACGACATGTGGG 24663 >seq407 Length=246863 Score = 170 bits (188), Expect = 2e-37 Identities = 216/289 (75%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106 ||||| |||| || |||||||| |||| || ||| | | ||||||| || || | Sbjct 19337 CTCATCGACACTTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 19279 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 19278 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 19219 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 19218 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 19162 Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 |||||| ||| ||| |||| | ||||| |||||||||||||||||||| |||||| || Sbjct 19161 TGGTTCTTTC-GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 19103 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 19102 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 19054 >seq90 Length=50681 Score = 102 bits (112), Expect = 1e-16 Identities = 282/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 42827 Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 42828 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 42886 Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 42887 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 42946 Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 42947 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 43006 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197 | ||||| || || | ||||| | || | |||| ||| ||| || || || || || Sbjct 43007 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 43065 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | |||| || | |||||| | | | |||||| || || ||| |||||||| Sbjct 43066 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 43125 Query 176258 TCCGCCA 176264 || |||| Sbjct 43126 TCGGCCA 43132 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980 |||||||| || || || | ||| || || || || | ||||| | ||| ||||| | | Sbjct 43889 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 43948 Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037 || |||||||| || || |||| |||||| || || |||| || || |||| || Sbjct 43949 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 44005 Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079 || ||||||||||| || | || |||||||| |||| || Sbjct 44006 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 44047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738016006800