Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq176 178 2e-39
seq407 170 2e-37
seq90 102 1e-16
>seq176
Length=37993
Score = 178 bits (196), Expect = 2e-39
Identities = 722/1121 (64%), Gaps = 35/1121 (3%)
Strand=Plus/Plus
Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785
|| |||||||| ||||| || ||||||||||||| || ||||| | || | |||
Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618
Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845
|| || || || |||| || |||| ||||||| ||||| || ||||| |||
Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678
Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903
|| |||||||| || | ||||| || || || | || || | ||| || || |
Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 23736
Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963
|||| |||||| | || | ||||| ||||| ||||| || | | |||||||||| |
Sbjct 23737 GTACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 23796
Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017
| || || |||||| ||| | |||| | || |||| ||||||||||||
Sbjct 23797 GATACGTTGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 23853
Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077
| |||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 23854 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 23913
Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137
|| || || || |||| ||| |||||||| | ||||| ||||||||| | || |
Sbjct 23914 TACGAGCTCGTGACCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 23973
Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197
| ||| ||||| |||| | ||||| | | || || || || |||| |
Sbjct 23974 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTAT 24033
Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256
||||| || |||||| || || | ||||| || | | | | | || |
Sbjct 24034 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAA 24092
Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315
|| | ||| | || | | ||| || || ||| || |||||||||| || |||
Sbjct 24093 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGT 24151
Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375
|| || || ||||| || || ||| ||| || |||||| | | |||
Sbjct 24152 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 24211
Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432
||||| ||| ||||||||||| |||||| |||| | | | |||||
Sbjct 24212 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 24268
Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491
||||| ||||| || || || | ||||| || | || || | || || |
Sbjct 24269 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCG 24327
Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551
| ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| |
Sbjct 24328 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTCGACACTG 24387
Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608
| || | || | || || || |||| || || || || || ||| | || |
Sbjct 24388 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 24444
Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668
| || ||||||| |||||||| |||||||| || | ||||| |||| | |
Sbjct 24445 GACCTGTTGGTCTTGGTGTCCAGGGTCTCGCCGACGCTTTCATGGCCCTTCGCATGCCGT 24504
Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728
| || |||| || || | |||| ||||| | || || ||||| || |||||||| |
Sbjct 24505 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATATCACGCGG 24564
Query 112729 CTCTTGAGGCG-AGTTCGGAGTTGGCAGAG-GTTGATGGTCCATATGAAACCTTTGAGGG 112786
| ||||||||| | || | ||| | || ||| |||| | |||||| | | || ||
Sbjct 24565 CGCTTGAGGCGTCATGCGAACTTGCCGAAGAGTT--TGGTACCTATGAATCTTACGAAGG 24622
Query 112787 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827
|||||| ||| | || | ||||| | || |||||||
Sbjct 24623 TTCTCCCATTTCTAAGGGTATCCTTCAGTACGACATGTGGG 24663
>seq407
Length=246863
Score = 170 bits (188), Expect = 2e-37
Identities = 216/289 (75%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 19337 CTCATCGACACTTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 19279
Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 19278 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 19219
Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 19218 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 19162
Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282
|||||| ||| ||| |||| | ||||| |||||||||||||||||||| |||||| ||
Sbjct 19161 TGGTTCTTTC-GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 19103
Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 19102 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 19054
>seq90
Length=50681
Score = 102 bits (112), Expect = 1e-16
Identities = 282/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 42827
Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 42828 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 42886
Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 42887 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 42946
Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 42947 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 43006
Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 43007 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 43065
Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257
| |||| || | |||||| | | | |||||| || || ||| ||||||||
Sbjct 43066 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 43125
Query 176258 TCCGCCA 176264
|| ||||
Sbjct 43126 TCGGCCA 43132
Score = 82.4 bits (90), Expect = 9e-11
Identities = 117/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980
|||||||| || || || | ||| || || || || | ||||| | ||| ||||| | |
Sbjct 43889 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 43948
Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037
|| |||||||| || || |||| |||||| || || |||| || || |||| ||
Sbjct 43949 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 44005
Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079
|| ||||||||||| || | || |||||||| |||| ||
Sbjct 44006 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 44047
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620738016006800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |