Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq176 199 5e-46 seq90 100 3e-16 seq407 91.5 2e-13 >seq176 Length=37993 Score = 199 bits (220), Expect = 5e-46 Identities = 725/1122 (65%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978 ||||||| || ||||| | ||||| || | |||||||| | | || || || | Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604 Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038 || | ||||| | ||| |||| ||||| || ||||| ||||| || ||||| | Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544 Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098 | || || ||| | | || ||| | ||||||| || | | | || | Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484 Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158 | | || || |||||||| ||||| ||||||| || ||||| |||||| ||| | Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGC 24424 Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218 | || || || || |||| ||| ||| || | ||| ||||| || ||| Sbjct 24423 GGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAACAA 24364 Query 110219 TCTTCGTGATTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATT 110270 ||| || || || || || |||| || || || ||||| | ||| | | Sbjct 24363 CCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA-- 24306 Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330 | || || ||||||| ||| |||||||| || |||| | || || | Sbjct 24305 GGCA------GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTG 110387 || |||| ||||| ||||| | ||| ||| || ||| ||| | || ||| || Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || || ||||||||| |||||||| ||| ||||| ||| ||| ||||| || || Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135 Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCT 110505 | || ||| ||||| ||| | | || | ||| || |||| | || | | ||| Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCT 24076 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565 |||| ||||| | || | | |||||||| | ||||| || || | ||| || Sbjct 24075 GCCTC-TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCA 24017 Query 110566 TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 || | ||||||| | || | ||||| ||| | || || | ||||||||| Sbjct 24016 GGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAA 23957 Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685 || || | ||||| | || ||||||||||||| || |||| || | ||| ||| Sbjct 23956 AGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGG 23897 Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745 || | || || | ||||| | | ||| | |||||| || || ||||||| ||| Sbjct 23896 TTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCG 23837 Query 110746 ATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799 | || || | |||| ||| | |||| ||| || || |||||||| | | | Sbjct 23836 AAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAA 23780 Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859 | | |||||||||||| || || | ||| | |||||| ||||| ||| ||| Sbjct 23779 GCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCC 23720 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 || ||||| || | ||| || || | |||||||||||| || ||| || || ||| Sbjct 23719 TTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCA 23660 Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978 || ||| |||| ||| | || ||||||||||| || || |||| |||| | || || Sbjct 23659 CAGGTCT-TGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601 Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020 ||| || ||||| || || || || || || || ||||| || Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq90 Length=50681 Score = 100 bits (110), Expect = 3e-16 Identities = 286/433 (66%), Gaps = 14/433 (3%) Strand=Plus/Plus Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417 ||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || | Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477 || ||||||||| |||||| || ||||||||||||| | | |||||| || Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 42827 Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536 | ||||| ||||| | ||| ||| ||| || || ||||| || | | || | Sbjct 42828 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 42886 Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596 | || || ||||| || || ||||||||||| || || || || |||||||||| Sbjct 42887 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 42946 Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650 | || || ||| || ||| || || ||| || || | || ||| Sbjct 42947 TGTT--ACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGG 43000 Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710 |||| || ||||| || || | || || | || || | || | ||| || ||||| | Sbjct 43001 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 43060 Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770 | || | |||| || | |||||| | | | |||||| || ||| |||||||| Sbjct 43061 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 43120 Query 167771 GACCATCTGCCAC 167783 |||| || ||||| Sbjct 43121 GACCGTCGGCCAC 43133 >seq407 Length=246863 Score = 91.5 bits (100), Expect = 2e-13 Identities = 208/308 (68%), Gaps = 19/308 (6%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || |||||||||||||| ||| |||| || || Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||| |||| ||||| ||||| ||||| | ||| ||||| |||||||| Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAAGAT 19172 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668 |||||||| || ||||| | || ||||| | ||| | ||| || ||| Sbjct 19173 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 19229 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727 || ||| |||||||||| |||||| | || || || || | || | || || | Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 19288 Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783 | || ||||| | || |||| |||||||| || | || ||||| |||| Sbjct 19289 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAAGTGTCGATGAGGAGAGAG 19344 Query 119784 TAGGTCTC 119791 |||||||| Sbjct 19345 TAGGTCTC 19352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588971840357000