Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq176 199 5e-46
seq90 100 3e-16
seq407 91.5 2e-13
>seq176
Length=37993
Score = 199 bits (220), Expect = 5e-46
Identities = 725/1122 (65%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 109919 CCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACG 109978
||||||| || ||||| | ||||| || | |||||||| | | || || || |
Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604
Query 109979 ACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAA 110038
|| | ||||| | ||| |||| ||||| || ||||| ||||| || ||||| |
Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544
Query 110039 AAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAA 110098
| || || ||| | | || ||| | ||||||| || | | | || |
Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484
Query 110099 ACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTC 110158
| | || || |||||||| ||||| ||||||| || ||||| |||||| ||| |
Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGC 24424
Query 110159 GAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAG 110218
| || || || || |||| ||| ||| || | ||| ||||| || |||
Sbjct 24423 GGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAACAA 24364
Query 110219 TCTTCGTGATTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATT 110270
||| || || || || || |||| || || || ||||| | ||| | |
Sbjct 24363 CCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA-- 24306
Query 110271 GACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGT 110330
| || || ||||||| ||| |||||||| || |||| | || || |
Sbjct 24305 GGCA------GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252
Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTG 110387
|| |||| ||||| ||||| | ||| ||| || ||| ||| | || ||| ||
Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195
Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447
|| || ||||||||| |||||||| ||| ||||| ||| ||| ||||| || ||
Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135
Query 110448 TGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCT 110505
| || ||| ||||| ||| | | || | ||| || |||| | || | | |||
Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCTTGCCCT 24076
Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565
|||| ||||| | || | | |||||||| | ||||| || || | ||| ||
Sbjct 24075 GCCTC-TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCA 24017
Query 110566 TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625
|| | ||||||| | || | ||||| ||| | || || | |||||||||
Sbjct 24016 GGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAA 23957
Query 110626 AGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGG 110685
|| || | ||||| | || ||||||||||||| || |||| || | ||| |||
Sbjct 23956 AGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGG 23897
Query 110686 TTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCG 110745
|| | || || | ||||| | | ||| | |||||| || || ||||||| |||
Sbjct 23896 TTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCG 23837
Query 110746 ATGGATCCCTTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAG 110799
| || || | |||| ||| | |||| ||| || || |||||||| | | |
Sbjct 23836 AAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAA 23780
Query 110800 ACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTA 110859
| | |||||||||||| || || | ||| | |||||| ||||| ||| |||
Sbjct 23779 GCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCC 23720
Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919
|| ||||| || | ||| || || | |||||||||||| || ||| || || |||
Sbjct 23719 TTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCA 23660
Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978
|| ||| |||| ||| | || ||||||||||| || || |||| |||| | || ||
Sbjct 23659 CAGGTCT-TGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601
Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020
||| || ||||| || || || || || || || ||||| ||
Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq90
Length=50681
Score = 100 bits (110), Expect = 3e-16
Identities = 286/433 (66%), Gaps = 14/433 (3%)
Strand=Plus/Plus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
|| ||||||||| |||||| || ||||||||||||| | | |||||| ||
Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 42827
Query 167478 ATCGAAGAGCTTTCGAG-CCTCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536
| ||||| ||||| | ||| ||| ||| || || ||||| || | | || |
Sbjct 42828 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 42886
Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596
| || || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 42887 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 42946
Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650
| || || ||| || ||| || || ||| || || | || |||
Sbjct 42947 TGTT--ACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGG 43000
Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710
|||| || ||||| || || | || || | || || | || | ||| || ||||| |
Sbjct 43001 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 43060
Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770
| || | |||| || | |||||| | | | |||||| || ||| ||||||||
Sbjct 43061 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 43120
Query 167771 GACCATCTGCCAC 167783
|||| || |||||
Sbjct 43121 GACCGTCGGCCAC 43133
>seq407
Length=246863
Score = 91.5 bits (100), Expect = 2e-13
Identities = 208/308 (68%), Gaps = 19/308 (6%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| || ||
Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||| | ||| ||||| ||||||||
Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAAGAACCAGAGAAGAAGAT 19172
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668
|||||||| || ||||| | || ||||| | ||| | ||| || |||
Sbjct 19173 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 19229
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTC-TATGCAGGGGACAGTTTGGATGGCTT 119727
|| ||| |||||||||| |||||| | || || || || | || | || || |
Sbjct 19230 GATCCATCGAAGAGCCCAGTCGGCCTT-CTTTCGGATACAAGGAATGGTGTCCATAGCGT 19288
Query 119728 CGAA----AAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAG 119783
| || ||||| | || |||| |||||||| || | || ||||| ||||
Sbjct 19289 CAAAGAGGAAGTTTCGTC----GAGCAGTGTCCTTAATGTAAGTGTCGATGAGGAGAGAG 19344
Query 119784 TAGGTCTC 119791
||||||||
Sbjct 19345 TAGGTCTC 19352
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588971840357000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |