Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq176 168 8e-37 seq90 122 1e-22 seq407 120 4e-22 >seq176 Length=37993 Score = 168 bits (186), Expect = 8e-37 Identities = 716/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154 ||||||| || | ||||| | || | || |||||||||| || | | ||||||| Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604 Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214 ||| |||| || | ||| || |||||| || | |||||||| || || || | Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544 Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484 Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329 || | || |||||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 24483 AAG-----CGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 24429 Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386 || || || |||| || ||||| | || | | || || || || || || Sbjct 24428 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTT 24372 Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 24371 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 24312 Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 24311 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252 Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||| |||| |||||||||||| ||||| || || || || || || Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135 Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680 | || ||| || || ||| | | || | |||| | | | | || ||| | || Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 24078 Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 24077 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCC 24018 Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 24017 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 23958 Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860 ||| || | ||||| |||| | || || || | | || |||| || | ||| || Sbjct 23957 AAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATG 23898 Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 23897 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 23838 Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974 || | || ||||| ||| |||| | || || || |||||||||| | Sbjct 23837 GAAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTA 23781 Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034 | || ||||| ||||| ||||| | || | |||||| || || ||| || Sbjct 23780 AGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 23721 Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 23720 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 23661 Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 23660 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601 Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196 ||| ||||| || |||| || ||||| || ||||| || Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq90 Length=50681 Score = 122 bits (134), Expect = 1e-22 Identities = 286/428 (67%), Gaps = 8/428 (2%) Strand=Plus/Plus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || ||||||||||| || | ||||| | | |||||||| | ||| |||||| || | Sbjct 42709 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 42768 Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407 ||||||||||| |||| ||||| || ||||||||||||| | | |||||| | Sbjct 42769 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 42825 Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466 || | ||||| |||| | || ||| ||| |||||||| || || | | || Sbjct 42826 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGC 42884 Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526 || || |||||||| ||||| ||||||||||| || || || || || || || Sbjct 42885 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 42944 Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586 |||||| || | ||| | ||| || ||||| ||| | || |||| Sbjct 42945 GTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTC 43004 Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646 ||||||||| || || | || |||| || || | || || || || ||||| ||||| Sbjct 43005 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 43064 Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706 | |||| || | ||| ||| || | | || || | ||| ||| |||||||| Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124 Query 168707 ATCCGCCA 168714 || |||| Sbjct 43125 GTCGGCCA 43132 >seq407 Length=246863 Score = 120 bits (132), Expect = 4e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || |||||||||||| ||||| || || || || || |||||| || || Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391 ||||||||||| |||||||| | ||| | |||| ||| ||| || || |||||||||| Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGC-GAAAGAACCAGAGAAGAAGA 19171 Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431 |||||||||| ||||| |||| || |||||| |||| Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589976633260600