Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq176 168 8e-37
seq90 122 1e-22
seq407 120 4e-22
>seq176
Length=37993
Score = 168 bits (186), Expect = 8e-37
Identities = 716/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 106095 CCCACATATCAAATTGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGG 106154
||||||| || | ||||| | || | || |||||||||| || | | |||||||
Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604
Query 106155 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 106214
||| |||| || | ||| || |||||| || | |||||||| || || || |
Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544
Query 106215 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 106269
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484
Query 106270 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 106329
|| | || |||||||| || ||||| | ||||| ||||| || ||||| || ||
Sbjct 24483 AAG-----CGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 24429
Query 106330 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 106386
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 24428 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTT 24372
Query 106387 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 106446
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 24371 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 24312
Query 106447 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 106506
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 24311 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252
Query 106507 GTACTCTAAAATTTCTGTACACAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 106563
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195
Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623
||| ||| |||| |||||||||||| ||||| || || || || || ||
Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135
Query 106624 TGACTTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 106680
| || ||| || || ||| | | || | |||| | | | | || ||| | ||
Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 24078
Query 106681 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 106740
|| | |||||| | || || |||||| || ||||| |||||| || ||
Sbjct 24077 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCC 24018
Query 106741 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 106800
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 24017 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 23958
Query 106801 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 106860
||| || | ||||| |||| | || || || | | || |||| || | ||| ||
Sbjct 23957 AAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATG 23898
Query 106861 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 106920
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 23897 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 23838
Query 106921 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 106974
|| | || ||||| ||| |||| | || || || |||||||||| |
Sbjct 23837 GAAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTA 23781
Query 106975 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 107034
| || ||||| ||||| ||||| | || | |||||| || || ||| ||
Sbjct 23780 AGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 23721
Query 107035 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 107094
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 23720 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 23661
Query 107095 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 107154
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 23660 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601
Query 107155 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 107196
||| ||||| || |||| || ||||| || ||||| ||
Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq90
Length=50681
Score = 122 bits (134), Expect = 1e-22
Identities = 286/428 (67%), Gaps = 8/428 (2%)
Strand=Plus/Plus
Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350
|| ||||||||||| || | ||||| | | |||||||| | ||| |||||| || |
Sbjct 42709 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 42768
Query 168351 TCTGGTTCAATTGAGCGC---CCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGA 168407
||||||||||| |||| ||||| || ||||||||||||| | | |||||| |
Sbjct 42769 TCTGGTTCAAT---GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCA 42825
Query 168408 GGATCAAAGATCTTGCGAG-CCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGTCTGAGA 168466
|| | ||||| |||| | || ||| ||| |||||||| || || | | ||
Sbjct 42826 GGGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGC 42884
Query 168467 AGCATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAAT 168526
|| || |||||||| ||||| ||||||||||| || || || || || || ||
Sbjct 42885 TGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGAT 42944
Query 168527 GTTGTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTC 168586
|||||| || | ||| | ||| || ||||| ||| | || ||||
Sbjct 42945 GTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTC 43004
Query 168587 ACCATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTC 168646
||||||||| || || | || |||| || || | || || || || ||||| |||||
Sbjct 43005 ACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 43064
Query 168647 ATCCTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACC 168706
| |||| || | ||| ||| || | | || || | ||| ||| ||||||||
Sbjct 43065 TTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACC 43124
Query 168707 ATCCGCCA 168714
|| ||||
Sbjct 43125 GTCGGCCA 43132
>seq407
Length=246863
Score = 120 bits (132), Expect = 4e-22
Identities = 124/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332
|||||| || |||||||||||| ||||| || || || || || |||||| || ||
Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112
Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 117391
||||||||||| |||||||| | ||| | |||| ||| ||| || || ||||||||||
Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGC-GAAAGAACCAGAGAAGAAGA 19171
Query 117392 TACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAA 117431
|||||||||| ||||| |||| || |||||| ||||
Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589976633260600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |