Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq407 152 1e-31
seq176 95.1 3e-14
seq90 93.3 9e-14
>seq407
Length=246863
Score = 152 bits (168), Expect = 1e-31
Identities = 167/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || || || ||||| ||||| |||||||| |||| ||||||
Sbjct 33491 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGT 33432
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || ||||| || ||||| || ||||| || | ||| || ||||| || || || ||
Sbjct 33431 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACC 33372
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| |||||||| || || ||| || || || ||||| || || ||||| ||||||||
Sbjct 33371 CTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 33312
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| || || || || | ||||| ||||| | ||||||
Sbjct 33311 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 149 bits (164), Expect = 1e-30
Identities = 159/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
|||||||||||| || ||||| ||||| || ||||| |||| |||||| | ||||| ||
Sbjct 33986 AACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 33927
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|| || ||||| || || || | |||||| || || |||||||| ||||| ||||| ||
Sbjct 33926 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTG 33867
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110
||| || ||| ||||| || || ||||| || || |||||||| || | || ||
Sbjct 33866 AATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTT 33807
Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||| |||||||| || || || | |||||
Sbjct 33806 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 147 bits (162), Expect = 5e-30
Identities = 154/201 (77%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||| | ||| || || || ||||||||||| ||||||||||||||||||| ||||||
Sbjct 34279 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 34220
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| |||||||| || || || || |||||||| |||||||| || || || || || ||
Sbjct 34219 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 34160
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095
|| |||||||| || || ||||||||| || ||||| || ||| ||| |||||
Sbjct 34159 CTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGA---TTCGACTTC 34103
Query 195096 AAGGGTAACCGTCTTTCCTGT 195116
|| || | ||||| || ||
Sbjct 34102 GAGAGTGATTGTCTTACCCGT 34082
Score = 138 bits (152), Expect = 3e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 194960 TATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTT 195019
|| |||| |||| ||||| || |||||||| ||||||||||| || ||||| | |||||
Sbjct 33170 TACTGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTT 33111
Query 195020 GTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGT 195079
| ||||| ||||| || || || ||||| || || || |||||| || || |||||||
Sbjct 33110 GCTGGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 33051
Query 195080 CCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCA 195139
| ||| ||||||||||| || | ||||| || || | ||| || ||||| | |||||
Sbjct 33050 CGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCA 32991
Query 195140 T 195140
|
Sbjct 32990 T 32990
Score = 132 bits (146), Expect = 1e-25
Identities = 136/178 (76%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
||||||| | | ||||| ||||| || || ||||| || |||||||| | ||||||||
Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33616
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| ||||| || || || ||||| ||||| || |||||| || ||||||||||| |
Sbjct 33615 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33556
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| || ||||| || | |||||||| || | ||| || ||||| | ||||||
Sbjct 33555 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
>seq176
Length=37993
Score = 95.1 bits (104), Expect = 3e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 160587 TTTTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATT 160646
||||||||||| |||||| |||||||||||||||||| | || || | |||||||||
Sbjct 23929 TTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATT 23988
Query 160647 GGAGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCG 160706
||| ||| | |||||| || |||||||||| || || || ||| || || |
Sbjct 23989 GGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTATACGGTGAAGAATTTG 24048
Query 160707 AGACTCTTTATGAAAGATACGA 160728
| | |||||||| || |||||
Sbjct 24049 AAAAGCTTTATGAGAGCTACGA 24070
>seq90
Length=50681
Score = 93.3 bits (102), Expect = 9e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 194963 TGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTT 195022
|||| || | ||| || || || || ||||||||||| || |||||||| | ||| || |
Sbjct 24068 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 24127
Query 195023 GGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCG 195082
|||| || || || || || ||||| || || || |||||| || || |||||||| |
Sbjct 24128 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 24187
Query 195083 AACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
| || || || ||||| | |||||||| ||
Sbjct 24188 AGGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 24221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109473568393355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |