Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq407 113 4e-19 seq355 113 4e-19 seq181 96.9 3e-14 >seq407 Length=246863 Score = 113 bits (124), Expect = 4e-19 Identities = 161/222 (73%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314 |||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| | Sbjct 33994 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 33937 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 ||| ||||||||||| || |||||||| | || |||||||||||||||||| |||| Sbjct 33936 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 33877 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433 | || || ||||| || || || || || || |||| || | | ||| ||| Sbjct 33876 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 33818 Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || | |||||| || || | ||| || || || || |||||| Sbjct 33817 GTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 33776 Score = 102 bits (112), Expect = 7e-16 Identities = 159/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| |||||| || ||||| |||||||| || | |||||| Sbjct 33488 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAGTCGGAAAGAGTT 33431 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||| |||||||| ||||| | || ||||| ||||| || || || Sbjct 33430 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 33371 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432 || || ||||| || || || || || || ||||||| | | || ||| || Sbjct 33370 TCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 33312 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| ||||| || || || ||||| ||||| ||||||||| Sbjct 33311 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 33269 Score = 100 bits (110), Expect = 2e-15 Identities = 146/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 |||||| | || ||||| || || ||| |||| |||||||||||| | |||||| Sbjct 34276 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 34219 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||||||||||||||||||||| || || |||| |||||||||||| || || || Sbjct 34218 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 34159 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || ||||| || || || || || || ||||| | || | | |||||| Sbjct 34158 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGACTTCGAG 34100 Query 563433 AGTAACAGTTTTACCAGTAAGA 563454 ||| | || ||||| |||||| Sbjct 34099 AGTGATTGTCTTACCCGTAAGA 34078 Score = 93.3 bits (102), Expect = 3e-13 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356 ||||||||| | ||||| ||| || ||||| |||||||| || || | || ||| | Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33616 Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416 | |||||||| || || || || || ||||| || || || ||||| || |||| Sbjct 33615 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33556 Query 563417 TGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | || | | || ||||| | ||| || || |||||||| || ||||||||||||||| Sbjct 33555 AG-GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCATA 33497 >seq355 Length=82685 Score = 113 bits (124), Expect = 4e-19 Identities = 143/192 (74%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122 ||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| | Sbjct 730 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 671 Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180 ||| | |||||||| || || |||||| || || |||||| ||| ||| |||| Sbjct 670 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 614 Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240 |||||||| || || || || | | ||||| ||| | |||||||| || |||||| Sbjct 613 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 554 Query 550241 CATTGGCCTTTC 550252 |||||||||||| Sbjct 553 CATTGGCCTTTC 542 >seq181 Length=40626 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914 |||||| || ||||||||||| | || || | ||| || | | ||| || ||| |||| Sbjct 20987 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 20928 Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974 ||||||||||||||| || ||||| || | || |||| ||| | |||||||| || | Sbjct 20927 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 20868 Query 390975 CATAACTTGGAAGAAAAATTC 390995 |||| | ||||| | ||||| Sbjct 20867 CATAGCGTGGAACCAGAATTC 20847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029266120251850