Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq407 113 4e-19
seq355 113 4e-19
seq181 96.9 3e-14
>seq407
Length=246863
Score = 113 bits (124), Expect = 4e-19
Identities = 161/222 (73%), Gaps = 6/222 (3%)
Strand=Plus/Minus
Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTTC 563314
|||||||| ||||| ||||||||| || ||||| || ||||| || | ||||| |
Sbjct 33994 AGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGG--ATGTTGTAGTCGGAAAGAGTAC 33937
Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374
||| ||||||||||| || |||||||| | || |||||||||||||||||| ||||
Sbjct 33936 GACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTT 33877
Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGA 563433
| || || ||||| || || || || || || |||| || | | ||| |||
Sbjct 33876 CCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAG-ACGACTCGACTTCAAGA 33818
Query 563434 GTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|| | |||||| || || | ||| || || || || ||||||
Sbjct 33817 GTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCATA 33776
Score = 102 bits (112), Expect = 7e-16
Identities = 159/223 (71%), Gaps = 6/223 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| |||||| || ||||| |||||||| || | ||||||
Sbjct 33488 GAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGG--ATATTGTAGTCGGAAAGAGTT 33431
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||| |||||||| ||||| | || ||||| ||||| || || ||
Sbjct 33430 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 33371
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTG-TGAGTACATTCGAG 563432
|| || ||||| || || || || || || ||||||| | | || ||| ||
Sbjct 33370 TCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGAC-TTCAAG 33312
Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
|||| ||||| || || || ||||| ||||| |||||||||
Sbjct 33311 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCATA 33269
Score = 100 bits (110), Expect = 2e-15
Identities = 146/202 (72%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313
|||||| | || ||||| || || ||| |||| |||||||||||| | ||||||
Sbjct 34276 GAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTG--AATATTGTAATCGGAAAGAGTT 34219
Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373
| ||||||||||||||||||||| || || |||| |||||||||||| || || ||
Sbjct 34218 CGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCC 34159
Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432
|| || ||||| || || || || || || ||||| | || | | ||||||
Sbjct 34158 TCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATC-GCTCGATTCGACTTCGAG 34100
Query 563433 AGTAACAGTTTTACCAGTAAGA 563454
||| | || ||||| ||||||
Sbjct 34099 AGTGATTGTCTTACCCGTAAGA 34078
Score = 93.3 bits (102), Expect = 3e-13
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 563297 TGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCT 563356
||||||||| | ||||| ||| || ||||| |||||||| || || | || ||| |
Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33616
Query 563357 GATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG 563416
| |||||||| || || || || || ||||| || || || ||||| || ||||
Sbjct 33615 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33556
Query 563417 TGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475
| || | | || ||||| | ||| || || |||||||| || |||||||||||||||
Sbjct 33555 AG-GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCATA 33497
>seq355
Length=82685
Score = 113 bits (124), Expect = 4e-19
Identities = 143/192 (74%), Gaps = 6/192 (3%)
Strand=Plus/Minus
Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAAC-A 550122
||||| ||||| || || |||| || ||||| |||||| |||||| || |||||| |
Sbjct 730 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 671
Query 550123 TTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATACTATTTTT 550180
||| | |||||||| || || |||||| || || |||||| ||| ||| ||||
Sbjct 670 CTTA-TCGGTGATGCCGCGAAGAATCAAGTTGCAATG--AATCCTTACAACACTGTTTTC 614
Query 550181 GATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAG 550240
|||||||| || || || || | | ||||| ||| | |||||||| || ||||||
Sbjct 613 GATGCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAG 554
Query 550241 CATTGGCCTTTC 550252
||||||||||||
Sbjct 553 CATTGGCCTTTC 542
>seq181
Length=40626
Score = 96.9 bits (106), Expect = 3e-14
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 390855 ATTTCTTACGGTACCATCATACTCTACTTTAATGTCTTCTAACATTTTAACTAATTTTCT 390914
|||||| || ||||||||||| | || || | ||| || | | ||| || ||| ||||
Sbjct 20987 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 20928
Query 390915 TTGGATATAACCAGTGTCTGCAGTTTTAATTGCAGTATTAATAATACCTTCTCTTCCTGC 390974
||||||||||||||| || ||||| || | || |||| ||| | |||||||| || |
Sbjct 20927 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 20868
Query 390975 CATAACTTGGAAGAAAAATTC 390995
|||| | ||||| | |||||
Sbjct 20867 CATAGCGTGGAACCAGAATTC 20847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029266120251850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |