Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq176 181 2e-40
seq407 123 5e-23
>seq176
Length=37993
Score = 181 bits (200), Expect = 2e-40
Identities = 710/1094 (65%), Gaps = 43/1094 (4%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTCAGG-GC 221424
|| ||||| || || |||| ||| || |||||| | |||| ||| || ||| | ||
Sbjct 24622 CCTTCGTAAGATTCATAGGTACCAAACTCTTCGGCAAGTTCGCATGAC-GCCTCAAGCGC 24564
Query 221425 AGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAA 221484
||||| || || ||||| |||||| | |||||| | | ||||| | || |||
Sbjct 24563 CGCGTGATATATCGTCTCGAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAA 24504
Query 221485 GGGCATACGCAGCATC-TGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCC 221543
||||| || || | |||||| ||||||| || ||||| || || | ||| | || |
Sbjct 24503 CGGCATGCGAAGGGCCATGAAAG-CGTCGGCGAGACCCTGGACACCAAGACCAACAGGTC 24445
Query 221544 TGTGTCTCCTGTTGGAA--GCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
|| | | ||||||| |||| || || ||||| ||||| |||| | ||| |
Sbjct 24444 GATGGCGCATGTTGGAGTTGCGG--GCCTCAGGCACTGGATAGTAGTTACGGGTGATTAC 24387
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
| ||| ||||||| || | || || | |||| |||||| | |||| |
Sbjct 24386 AGTGTCGAGGTTCTTTGTAACAACCTTGGTAATCTCGTGCAGCTTTT------TGAAGTC 24333
Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721
| ||| | ||| | || || || || || || |||| || || ||
Sbjct 24332 ATAGACGC----GACGTTCAAGG--TCTACGAAGGCAGGAAGAGCAAGAGAAGCAAGATT 24279
Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781
||| || || || || || | ||||| ||||| || ||||||||||| ||| |
Sbjct 24278 ACAGACAGCAACTTCATCAGGAGAAGAATACTCCATGATTTCAGTACAGAGGTTACTGGA 24219
Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841
|||||||| || ||||| || || || |||||| |||||||| ||||||||| ||
Sbjct 24218 TTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGAT 24159
Query 221842 A-AAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CG 221899
||||||| || || || |||||| | || || | ||| || | ||||| |
Sbjct 24158 GTAAGGGACA-CCGGTTTCGGTTTGAGCCTCGAGGATGGCGAACCAAAGCT-TCTGGGCT 24101
Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAAC 221959
| | || || | | |||| ||| | || | ||| ||| | |||||
Sbjct 24100 TTGATAGTTTTCCTTCCCTTGCCCTGCCTCT---CGTAGCTCTCATAAAGCTTTTCAAAT 24044
Query 221960 TTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGC 222019
| ||||||||| | ||| | || || || ||| |||||||||||| ||| |||| | |
Sbjct 24043 TCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCC 23984
Query 222020 TTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCT 222079
| | || ||| | || |||||| || || | |||||| || || | || || ||
Sbjct 23983 CCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCA 23924
Query 222080 CTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCA 222139
| | || ||||||| || | ||| ||||| | || | || ||||| | |||
Sbjct 23923 CGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCA 23864
Query 222140 GCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCC 222199
|||||||| ||||| ||||||| ||| | || || || |||||||| ||||| || ||
Sbjct 23863 GCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGGTCA 23804
Query 222200 AC-CATC---CTCTCCAGAGCGTTG-AAGATGCGAAGGGTCGGTACCAGTCCGTTGGATC 222254
|| ||| || | |||| | ||| | || || | || | | ||||||||
Sbjct 23803 ACGTATCGAGCTGT----GGCGTCGTAAGCT-CGGAGCATAGGAATGATACCGTTGGAGT 23749
Query 222255 GACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA--GACATG-C 222311
||| ||||| || |||||| | || || | || || || | | | | |
Sbjct 23748 AACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC---GGATATTGTGAATGTGAAGAC 23692
Query 222312 CGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCT 222371
| ||||||||||| || |||||| || ||| |||||||||| || ||| || |
Sbjct 23691 CAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCAT 23632
Query 222372 CCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAAC 222431
| || ||||| ||||| | | || || || || || ||||| || | | || | ||
Sbjct 23631 CAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTAC 23572
Query 222432 AGGCGTTAAACAGC 222445
|||||| || |||
Sbjct 23571 CGGCGTTGAAAAGC 23558
>seq407
Length=246863
Score = 123 bits (136), Expect = 5e-23
Identities = 131/173 (76%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 25870 TTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTT 25929
|| |||||||| || | || |||||||| |||||||| ||||| ||| ||||| ||
Sbjct 19211 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 19152
Query 25930 GCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAG 25989
||| | ||||||||||| ||| || || |||||| || || ||| || ||||||
Sbjct 19151 GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAG 19092
Query 25990 CTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACAC 26042
|||||| | |||||||||||||||| || |||||||| || |||| |||
Sbjct 19091 CTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTCAC 19039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928838240033600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |