Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq355 131 1e-24
seq407 118 7e-21
seq181 87.8 1e-11
seq57 87.8 1e-11
>seq355
Length=82685
Score = 131 bits (144), Expect = 1e-24
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460
||||| || || || ||| |||||||||||||||||||| |||| | ||| ||||||
Sbjct 730 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 671
Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520
||||| || ||||| || || |||||| |||| |||||| || ||| |||| |||
Sbjct 670 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 611
Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580
||||| | ||||| || ||||| ||| | ||| || || || | || ||| |||
Sbjct 610 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 551
Query 474581 TGGCCTTTTAAGGTGAT 474597
|||||||| ||||| ||
Sbjct 550 TGGCCTTTCAAGGTAAT 534
>seq407
Length=246863
Score = 118 bits (130), Expect = 7e-21
Identities = 130/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656
||||||| | ||||| ||| || ||||||||||| || || || | ||||||||
Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614
Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716
|||||||| || || |||||||| |||||||| |||||| ||||| || |||| |
Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554
Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | ||||| || ||||| || ||||| |||||||| |||||||||||
Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTG 33501
Score = 114 bits (126), Expect = 8e-20
Identities = 126/165 (76%), Gaps = 2/165 (1%)
Strand=Plus/Minus
Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665
||||| ||| ||||||||| ||||| |||||||| || | ||||| || ||||||||
Sbjct 33156 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 33097
Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724
|| || |||||||| || ||||| |||||| || || || || | | | | |
Sbjct 33096 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 33037
Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| |||| || ||||| ||||||||||||||||| |||||||||||
Sbjct 33036 T-CAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 32993
Score = 114 bits (126), Expect = 8e-20
Identities = 156/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| ||||| | || ||||| || ||| || || | ||| || || | ||||||
Sbjct 33490 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTT 33431
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | ||||||||||||||||| || ||||| | || || || ||||| || || ||
Sbjct 33430 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 33371
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731
||||||||||| ||||| || ||| || || ||||||| | | |||||||
Sbjct 33370 TCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 33311
Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| ||||| |||||||| || || ||||| |||||
Sbjct 33310 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 33273
Score = 114 bits (126), Expect = 8e-20
Identities = 159/220 (72%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| ||||| ||| || || | || || || | |||||
Sbjct 33998 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 33939
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| |||||||| || ||||||||||| | ||||| |||||||||||||| ||
Sbjct 33938 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 33879
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||||||| |||||||| || || || ||||| |||| | | | |||||
Sbjct 33878 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCAA 33820
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || |||||||| ||||| | |||||| || || || ||
Sbjct 33819 GAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTG 33780
Score = 93.3 bits (102), Expect = 3e-13
Identities = 106/139 (76%), Gaps = 4/139 (3%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
|| ||||| | || ||||| || || ||| |||| ||| ||| ||||| | ||||
Sbjct 34278 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 34221
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
||| | |||||||||||| ||||| || || || || ||||| |||||||| || || |
Sbjct 34220 TTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATAC 34161
Query 480670 CTTCCTTGTCTTGAATCTT 480688
| ||||||||||| |||||
Sbjct 34160 CCTCCTTGTCTTGGATCTT 34142
>seq181
Length=40626
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746
|||||| |||||||||||||| | || || | || || | ||| || ||| ||||
Sbjct 20987 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 20928
Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806
||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || |
Sbjct 20927 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 20868
Query 318807 CATAACTTGGAAAAAGAATTC 318827
|||| | ||||| |||||||
Sbjct 20867 CATAGCGTGGAACCAGAATTC 20847
>seq57
Length=209335
Score = 87.8 bits (96), Expect = 1e-11
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||| || || || || |||||||| |||| || ||||| || || || |||||
Sbjct 190437 GTTCCTGCCTACTTCAACGATTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCT 190496
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
|||||| | || | ||||||||||| ||||| || || ||||| |||| || ||||||
Sbjct 190497 GGTCTTGAGGTGCTCCGTATTATTAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 190556
Query 474869 GATAAGAA 474876
|| ||||
Sbjct 190557 GACGAGAA 190564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268154964408620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |