Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq355 131 1e-24 seq407 118 7e-21 seq181 87.8 1e-11 seq57 87.8 1e-11 >seq355 Length=82685 Score = 131 bits (144), Expect = 1e-24 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 474401 GCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACAT 474460 ||||| || || || ||| |||||||||||||||||||| |||| | ||| |||||| Sbjct 730 GCCAACGATCAGGGCAATCGAACAACACCATCATATGTTGCTTTCAATGACTCTGAACGA 671 Query 474461 CTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTTTGAT 474520 ||||| || ||||| || || |||||| |||| |||||| || ||| |||| ||| Sbjct 670 CTTATCGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCTTACAACACTGTTTTCGAT 611 Query 474521 GCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATATGCGTCAT 474580 ||||| | ||||| || ||||| ||| | ||| || || || | || ||| ||| Sbjct 610 GCTAAGCGGTTGATCGGCCGTAAGTTTAACGATGCCGAAGTTCAGGCCGACATGAAGCAT 551 Query 474581 TGGCCTTTTAAGGTGAT 474597 |||||||| ||||| || Sbjct 550 TGGCCTTTCAAGGTAAT 534 >seq407 Length=246863 Score = 118 bits (130), Expect = 7e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 480597 TAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGA 480656 ||||||| | ||||| ||| || ||||||||||| || || || | |||||||| Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614 Query 480657 TCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG 480716 |||||||| || || |||||||| |||||||| |||||| ||||| || |||| | Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554 Query 480717 TGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | ||||| || ||||| || ||||| |||||||| ||||||||||| Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTG 33501 Score = 114 bits (126), Expect = 8e-20 Identities = 126/165 (76%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 480606 AGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGA 480665 ||||| ||| ||||||||| ||||| |||||||| || | ||||| || |||||||| Sbjct 33156 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 33097 Query 480666 ATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGT 480724 || || |||||||| || ||||| |||||| || || || || | | | | | Sbjct 33096 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 33037 Query 480725 TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||| || ||||| ||||||||||||||||| ||||||||||| Sbjct 33036 T-CAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTG 32993 Score = 114 bits (126), Expect = 8e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || ||||| | || ||||| || ||| || || | ||| || || | |||||| Sbjct 33490 CGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTT 33431 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | ||||||||||||||||| || ||||| | || || || ||||| || || || Sbjct 33430 CGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCC 33371 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||||||||| ||||| || ||| || || ||||||| | | ||||||| Sbjct 33370 TCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGG 33311 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| ||||| |||||||| || || ||||| ||||| Sbjct 33310 GTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 33273 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| ||||| ||| || || | || || || | ||||| Sbjct 33998 ACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGT 33939 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| |||||||| || ||||||||||| | ||||| |||||||||||||| || Sbjct 33938 ACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACC 33879 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || || || ||||| |||| | | | ||||| Sbjct 33878 TTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGA-CTTCAA 33820 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || |||||||| ||||| | |||||| || || || || Sbjct 33819 GAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTG 33780 Score = 93.3 bits (102), Expect = 3e-13 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || ||||| | || ||||| || || ||| |||| ||| ||| ||||| | |||| Sbjct 34278 CGGAGACGCAAGACGAGATGGAGAGTGGACTC-CTTTTGAAT-ATTGTAATCGGAAAGAG 34221 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 ||| | |||||||||||| ||||| || || || || ||||| |||||||| || || | Sbjct 34220 TTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATAC 34161 Query 480670 CTTCCTTGTCTTGAATCTT 480688 | ||||||||||| ||||| Sbjct 34160 CCTCCTTGTCTTGGATCTT 34142 >seq181 Length=40626 Score = 87.8 bits (96), Expect = 1e-11 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 318687 ATTTCTTACAGTACCATCATATTCCACTTTAATATCTTCTAGTATTTTAACTAATTTTCT 318746 |||||| |||||||||||||| | || || | || || | ||| || ||| |||| Sbjct 20987 ATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTCT 20928 Query 318747 TTGTACATAACCTGTGTCTGCAGTTTTAATAGCAGTATTAATAATACCTTCTCTTCCTGC 318806 ||| | |||||| || || ||||| || | ||| |||| ||| | |||||||| || | Sbjct 20927 TTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCACC 20868 Query 318807 CATAACTTGGAAAAAGAATTC 318827 |||| | ||||| ||||||| Sbjct 20867 CATAGCGTGGAACCAGAATTC 20847 >seq57 Length=209335 Score = 87.8 bits (96), Expect = 1e-11 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||| || || || || |||||||| |||| || ||||| || || || ||||| Sbjct 190437 GTTCCTGCCTACTTCAACGATTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCT 190496 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 |||||| | || | ||||||||||| ||||| || || ||||| |||| || |||||| Sbjct 190497 GGTCTTGAGGTGCTCCGTATTATTAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 190556 Query 474869 GATAAGAA 474876 || |||| Sbjct 190557 GACGAGAA 190564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268154964408620