Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq176 140 4e-28
seq90 129 7e-25
seq407 120 4e-22
>seq176
Length=37993
Score = 140 bits (154), Expect = 4e-28
Identities = 709/1119 (63%), Gaps = 31/1119 (3%)
Strand=Plus/Plus
Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385
|| ||||| || ||||| || |||| || ||||| |||||||| | |||| |||
Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618
Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678
Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 23738
Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565
|| |||||| | || | ||||| ||||| ||||| || | | |||||||||| ||
Sbjct 23739 ACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 23798
Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619
|| || | |||| || | |||| | || || |||| |||| | || ||
Sbjct 23799 TACGTTGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 23855
Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679
||||| || ||| | | || ||| |||| ||| | ||||| ||| | || ||||
Sbjct 23856 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 23915
Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739
|| | | || || || | |||| ||||| | || |||||||||||||| || ||
Sbjct 23916 CGAGCTCGTGACCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 23975
Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799
| ||| | ||| ||||| | ||||| | | || || || || ||||||
Sbjct 23976 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTATAC 24035
Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATG-CGA 75857
||||| || |||||| || || | || | ||||| |||| | || || | |
Sbjct 24036 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACG-AGAGGCAGGGCA-AGGGAAGGAAAA 24093
Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916
|| | |||| | || | ||||| || || ||| | | || || || || ||
Sbjct 24094 CTATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGTC 24152
Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976
|| || || |||||||||||| ||| ||| ||||||||| | | || ||
Sbjct 24153 CCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACC 24212
Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036
||||| | || || || || ||||| | ||||| | | ||||| |||
Sbjct 24213 ATCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCT 24272
Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096
|| || ||| | || || | || ||||| | || | || |||| | |
Sbjct 24273 GTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTAT 24332
Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156
|| | |||| || || || || || ||| ||||||| || || || || || ||
Sbjct 24333 GACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTCGACACTGTAATC 24392
Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213
| | || | ||||| || |||| || || || || || ||||| || |||||
Sbjct 24393 ACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGACCT 24449
Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268
||||| | ||||| || |||||||| || | ||| || | || |||| |
Sbjct 24450 GTTGGTCTTGGTGTCCAGGGTCTCGCCGACG-----CTTTCATGGCCCTTCGCATGCCGT 24504
Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328
| || || | ||| || | ||| | ||| | ||||| || || || ||||||||
Sbjct 24505 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATATCACGCGG 24564
Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388
| || |||||| || ||| | || |||| ||| ||||||| | | || ||||
Sbjct 24565 CGCTTGAGGCGTCATGCGAACTTGCCGAAGAGTTTGGTACCTATGAATCTTACGAAGGTT 24624
Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427
||||| || | || | ||||||| || |||||||
Sbjct 24625 CTCCCATTTCTAAGGGTATCCTTCAGTACGACATGTGGG 24663
>seq90
Length=50681
Score = 129 bits (142), Expect = 7e-25
Identities = 288/427 (67%), Gaps = 4/427 (1%)
Strand=Plus/Minus
Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417
|||| || |||||||| ||| ||| | || || | | || ||| ||| | || |
Sbjct 43132 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 43073
Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477
||| | ||||| ||||| || || || || | || || |||| || | || || |
Sbjct 43072 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 43013
Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537
|||||||||||| || | ||| ||||| || ||| | ||| | ||
Sbjct 43012 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCACAAAACTTCGTCGGCA 42953
Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597
|||||||| || || || || || || ||||||||||| ||||| |||||||
Sbjct 42952 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 42893
Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656
| || || || | | || || |||||||| ||| ||| ||| | |||| |||
Sbjct 42892 AAGACGCAGCTTCTGCTCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 42834
Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715
|| | ||| |||||| | | ||||||||||||| ||| ||||| | || | |||||
Sbjct 42833 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGCGC-ATTGA 42775
Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775
|||||| | || |||||| || | |||||||| | | ||||| | || ||||||||
Sbjct 42774 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 42715
Query 14776 TACGGGT 14782
||| |||
Sbjct 42714 TACTGGT 42708
>seq407
Length=246863
Score = 120 bits (132), Expect = 4e-22
Identities = 124/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130
|||| |||||| || |||| ||||| |||||||||||||||||||| || || |||
Sbjct 19211 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 19152
Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189
||| |||| | ||| | |||||||| ||||||||||| || || |||||| || ||
Sbjct 19151 -GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGA 19093
Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229
|| || || ||||| |||||||||||| || ||||||
Sbjct 19092 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 19053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596565386727200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |