Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq176 140 4e-28 seq90 129 7e-25 seq407 120 4e-22 >seq176 Length=37993 Score = 140 bits (154), Expect = 4e-28 Identities = 709/1119 (63%), Gaps = 31/1119 (3%) Strand=Plus/Plus Query 75326 CTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAG 75385 || ||||| || ||||| || |||| || ||||| |||||||| | |||| ||| Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618 Query 75386 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 75445 || ||||| || | |||||||| | ||||| | | ||||| || ||||| ||| Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678 Query 75446 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 75505 || || |||||||| | ||||| || || | | || || || ||| || Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 23738 Query 75506 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 75565 || |||||| | || | ||||| ||||| ||||| || | | |||||||||| || Sbjct 23739 ACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 23798 Query 75566 TATGTAAATCAAGCGGGGCGTCGCAAGGG-----GT-CCATCGCGGTCTACTTGGAACCA 75619 || || | |||| || | |||| | || || |||| |||| | || || Sbjct 23799 TACGTTGACCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 23855 Query 75620 TGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCT 75679 ||||| || ||| | | || ||| |||| ||| | ||||| ||| | || |||| Sbjct 23856 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 23915 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || || || | |||| ||||| | || |||||||||||||| || || Sbjct 23916 CGAGCTCGTGACCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 23975 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 | ||| | ||| ||||| | ||||| | | || || || || |||||| Sbjct 23976 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTATAC 24035 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG-AGGGTAGAGCCAATG-CGA 75857 ||||| || |||||| || || | || | ||||| |||| | || || | | Sbjct 24036 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACG-AGAGGCAGGGCA-AGGGAAGGAAAA 24093 Query 75858 CTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACA 75916 || | |||| | || | ||||| || || ||| | | || || || || || Sbjct 24094 CTATCAAAGCC-CAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGTC 24152 Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || || || |||||||||||| ||| ||| ||||||||| | | || || Sbjct 24153 CCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACC 24212 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 ||||| | || || || || ||||| | ||||| | | ||||| ||| Sbjct 24213 ATCAAATCCAGTAACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTGCT 24272 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 || || ||| | || || | || ||||| | || | || |||| | | Sbjct 24273 GTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGAACGTCGCGTCTAT 24332 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | |||| || || || || || ||| ||||||| || || || || || || Sbjct 24333 GACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTCGACACTGTAATC 24392 Query 76157 GACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGACACAGACCT 76213 | | || | ||||| || |||| || || || || || ||||| || ||||| Sbjct 24393 ACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGACCT 24449 Query 76214 ATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCA-----T 76268 ||||| | ||||| || |||||||| || | ||| || | || |||| | Sbjct 24450 GTTGGTCTTGGTGTCCAGGGTCTCGCCGACG-----CTTTCATGGCCCTTCGCATGCCGT 24504 Query 76269 TTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCAT 76328 | || || | ||| || | ||| | ||| | ||||| || || || |||||||| Sbjct 24505 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATATCACGCGG 24564 Query 76329 CCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTT 76388 | || |||||| || ||| | || |||| ||| ||||||| | | || |||| Sbjct 24565 CGCTTGAGGCGTCATGCGAACTTGCCGAAGAGTTTGGTACCTATGAATCTTACGAAGGTT 24624 Query 76389 CTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG 76427 ||||| || | || | ||||||| || ||||||| Sbjct 24625 CTCCCATTTCTAAGGGTATCCTTCAGTACGACATGTGGG 24663 >seq90 Length=50681 Score = 129 bits (142), Expect = 7e-25 Identities = 288/427 (67%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 14358 TGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATC 14417 |||| || |||||||| ||| ||| | || || | | || ||| ||| | || | Sbjct 43132 TGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTTGTTTCAAGCGAAACC 43073 Query 14418 TCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACC 14477 ||| | ||||| ||||| || || || || | || || |||| || | || || | Sbjct 43072 TCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGGAGAAAACCGCATATC 43013 Query 14478 ACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 |||||||||||| || | ||| ||||| || ||| | ||| | || Sbjct 43012 ACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGCTTAGCACAAAACTTCGTCGGCA 42953 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 |||||||| || || || || || || ||||||||||| ||||| ||||||| Sbjct 42952 GTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTCGTCTTGCAGGTGGTA 42893 Query 14598 AGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGG-CTCGCAAGATC 14656 | || || || | | || || |||||||| ||| ||| ||| | |||| ||| Sbjct 42892 AAGACGCAGCTTCTGCTCGTTATATCTTCACAAACCTT-CCACGGATGACTCGAGCAATC 42834 Query 14657 TTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGG-ACGCTCCATTGA 14715 || | ||| |||||| | | ||||||||||||| ||| ||||| | || | ||||| Sbjct 42833 TTCCACCCTGCAGATGACGGGTTGCTCAACTACTTGGTCGAGGATGGTATGCGC-ATTGA 42775 Query 14716 ACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTATCGG 14775 |||||| | || |||||| || | |||||||| | | ||||| | || |||||||| Sbjct 42774 ACCAGATTATTTCATGCCCACCGTTCCAATGGTATTGATCAATGGTGCAGATGGTATCGG 42715 Query 14776 TACGGGT 14782 ||| ||| Sbjct 42714 TACTGGT 42708 >seq407 Length=246863 Score = 120 bits (132), Expect = 4e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 |||| |||||| || |||| ||||| |||||||||||||||||||| || || ||| Sbjct 19211 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 19152 Query 65131 TGCG-CTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGA 65189 ||| |||| | ||| | |||||||| ||||||||||| || || |||||| || || Sbjct 19151 -GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGA 19093 Query 65190 ACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || || || ||||| |||||||||||| || |||||| Sbjct 19092 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 19053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596565386727200