Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq90 122 3e-22 seq176 107 6e-18 seq407 105 2e-17 seq181 93.3 1e-13 >seq90 Length=50681 Score = 122 bits (134), Expect = 3e-22 Identities = 261/384 (68%), Gaps = 12/384 (3%) Strand=Plus/Plus Query 59989 ACCAGTACCAATACCCTTTGTTCCATTGATAAGAATCATCGGGATAATTGGGATATAATA 60048 ||||||||| ||||| | || |||||||| | | ||| || | | || || |||| Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 60049 AACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAA--AACCTTGTCGTCAATT 60106 | |||| |||| | |||||| || ||||| ||| | |||| ||||| | Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTA-GTTGAGCAACC----CGTCATCT 42822 Query 60107 TCGGGA---AATATAGCCCGAGTAATCT-TGGATAATTGTGTGAAAATATACCTCTCGGA 60162 | || || || || ||||| ||| |||| || |||||| ||||| | | || Sbjct 42823 GCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTT-TGTGAAGATATAACGAGCAGA 42881 Query 60163 TGCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATT 60222 |||||||| || ||||| |||||| || |||||||| ||||| || | | ||||| Sbjct 42882 AGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATT 42941 Query 60223 AATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC 60282 ||||||||| ||| ||||| ||||| || | || ||||| | | | |||||||| Sbjct 42942 GATGTTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGC 43001 Query 60283 TTCACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAAT 60342 |||||| || |||||| | | | || ||||| || || | || ||||| || || Sbjct 43002 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGAT 43061 Query 60343 TTCGGAGTGGAGTTTTTTCTTGAA 60366 ||| | ||| ||| |||||| Sbjct 43062 TTCTTTGGTGAGGTTTCGCTTGAA 43085 >seq176 Length=37993 Score = 107 bits (118), Expect = 6e-18 Identities = 305/466 (65%), Gaps = 7/466 (2%) Strand=Plus/Minus Query 155859 AGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCT 155916 ||||||||||||| |||| || | || | |||| || | |||| ||||||| Sbjct 24022 AGTCCAGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCAT--CGGATTCGACACGCT 23965 Query 155917 CCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCAT 155976 ||| || | ||| ||| | || ||||||||||| | || | |||||| | Sbjct 23964 TCATGAAAAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCT 23905 Query 155977 CGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGAT 156036 || || ||||||| || || | ||| || | ||||| || ||||| |||| Sbjct 23904 TACCATGGTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGAT 23845 Query 156037 ACATAGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTAT 156093 | || || || |||| | |||| ||||| || || || || ||||| || | Sbjct 23844 AGATGGCGAAGGCACCAGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGT 23785 Query 156094 TGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCG 156153 | | | | ||||||||||| ||||| ||||| |||||||| ||| ||| | | Sbjct 23784 CGTAAGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGG 23725 Query 156154 AACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTT 156213 | || | || | ||| ||||| || || ||||||||||| | || || || | Sbjct 23724 AGCCCTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCT 23665 Query 156214 GAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTA 156273 |||| || ||| | ||||| | | ||||| ||||| || ||||| | ||| | | | Sbjct 23664 GAGCACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGA 23605 Query 156274 GATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAG 156319 | |||| || | ||| ||||| || || || |||||||| || Sbjct 23604 GGAAGCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq407 Length=246863 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 133437 TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGA 133496 |||||||||| |||||| | ||||||||| || ||||||| ||| | | Sbjct 19273 TTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTT 19214 Query 133497 GTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGT 133556 |||| | || ||| |||||||||||| || ||||| || || ||| |||| | | Sbjct 19213 GTTTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTT 19154 Query 133557 TCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 || ||||| || |||||||| ||||| ||| | | ||||| || || ||||||| Sbjct 19153 TCGCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACG 19094 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 | || || || | ||||||| || |||||||| |||||| Sbjct 19093 AGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCC 19053 >seq181 Length=40626 Score = 93.3 bits (102), Expect = 1e-13 Identities = 200/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| || || ||||||| ||| | | | ||| ||||| |||| || | | Sbjct 20988 TATTTCTCACAGTACCATCATAAGCAACCTTCAAGTCCTCCATCGCTTTGACCAATCTTC 20929 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 || ||||||||||| || || || ||||| |||||||| | ||| | ||||||| Sbjct 20928 TTTGGATATAACCAGTCTCAGCAGTCTTGACAGCGGTATCAATCAAACCTTCTCGACCAC 20869 Query 302657 CCATAGCATGGAAGAATAGCTCTTCCG--GTCGTAGCCCCCCAATAAAGGAGCTCTCAAC 302714 ||||||| ||||| | | |||| | ||| | || | ||| | | ||| | ||||| Sbjct 20868 CCATAGCGTGGAACCAGAATTCTTGAGGAGTC-AAACCACGCAA-ATACGAGTTTTCAAC 20811 Query 302715 GAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT- 302770 ||| || || | |||||| || | ||||| ||| | |||||||| | | || || Sbjct 20810 GAAGCCTCGAGACTCGGGTCCGTAGTCGTC--TCTT-GAGAAGTGTGGTAATGACCGGTG 20754 Query 302771 TCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 || | | ||| ||| |||||| ||||| |||||| ||| || |||| Sbjct 20753 TCGGA-ATCCGAATGAGATACGTTTTCCTTCAACGAACTGTTGACCCA 20707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471806945420405