Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq176 116 5e-20 seq513 93.3 5e-13 seq407 93.3 5e-13 >seq176 Length=37993 Score = 116 bits (128), Expect = 5e-20 Identities = 177/252 (70%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| || || ||| ||| | | |||||||| || | || |||||||| Sbjct 23809 TGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATACCGTTGGAG 23750 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | || ||||| || || | ||||| ||| || || | ||||| | || || Sbjct 23749 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 23690 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||| | || || ||||| || |||||||| || || Sbjct 23689 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 23630 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||||| |||||||| ||||||| ||||| || || |||| || | | || ||| Sbjct 23629 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 23570 Query 1630306 GCGTTGAAGAGC 1630317 |||||||| ||| Sbjct 23569 GCGTTGAAAAGC 23558 >seq513 Length=107612 Score = 93.3 bits (102), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315 ||||| || || ||| ||||| | || || || | || ||||||| |||| |||| Sbjct 75137 CAGTCTGGTACCGAGCACGGCGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACAAC 75078 Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375 ||||| || || ||||| |||| | | || || || || || ||| Sbjct 75077 AAGGACCAACGACCTCATGACTACGCCGAGACTGACCTTTACCCCCGACCTTCCCATGCC 75018 Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435 |||||||||||| | ||||||||||| ||||||| || || ||||| || || |||| Sbjct 75017 GACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCTGGCGGTGGTCGTGCGTCC 74958 Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484 || || ||||| || || || || || |||||| | || ||||||| Sbjct 74957 GCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCGGAGAAAT 74909 >seq407 Length=246863 Score = 93.3 bits (102), Expect = 5e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776 |||||||||||||| |||||| | ||| ||||||| |||||| | || ||||||| Sbjct 18733 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 18792 Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836 | || | ||| ||| || | | | || || |||||||| |||||||| || Sbjct 18793 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 18852 Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872 ||| ||||||||||| ||||||||| ||||| || Sbjct 18853 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 18888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107092833454105