Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq176 116 5e-20
seq513 93.3 5e-13
seq407 93.3 5e-13
>seq176
Length=37993
Score = 116 bits (128), Expect = 5e-20
Identities = 177/252 (70%), Gaps = 0/252 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
||||| ||||| || || ||| ||| | | |||||||| || | || ||||||||
Sbjct 23809 TGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATACCGTTGGAG 23750
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
| || ||||| || || | ||||| ||| || || | ||||| | || ||
Sbjct 23749 TAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGAAGACCA 23690
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
|| || ||||| | ||||||||| | || || ||||| || |||||||| || ||
Sbjct 23689 ATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACCATCA 23630
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|| ||||| |||||||| ||||||| ||||| || || |||| || | | || |||
Sbjct 23629 ATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGTACCG 23570
Query 1630306 GCGTTGAAGAGC 1630317
|||||||| |||
Sbjct 23569 GCGTTGAAAAGC 23558
>seq513
Length=107612
Score = 93.3 bits (102), Expect = 5e-13
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18256 CAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAAC 18315
||||| || || ||| ||||| | || || || | || ||||||| |||| ||||
Sbjct 75137 CAGTCTGGTACCGAGCACGGCGTTACTCTTGGTACCCCTATCGGCCTTCTTGTCCACAAC 75078
Query 18316 CGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCGCGGCCCTCACACGCC 18375
||||| || || ||||| |||| | | || || || || || |||
Sbjct 75077 AAGGACCAACGACCTCATGACTACGCCGAGACTGACCTTTACCCCCGACCTTCCCATGCC 75018
Query 18376 GACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGCGGAGGCCGGTCGTCT 18435
|||||||||||| | ||||||||||| ||||||| || || ||||| || || ||||
Sbjct 75017 GACTACACCTACCTTGCCAAGTACGGTGTCAAGGCCTCTTCTGGCGGTGGTCGTGCGTCC 74958
Query 18436 GCCCGCGAGACCCTCATGCGCGTCGCCGCCGGCGCGGTCGCCGAGAAAT 18484
|| || ||||| || || || || || |||||| | || |||||||
Sbjct 74957 GCGCGTGAGACTATCGGACGAGTTGCGGCTGGCGCGATTGCGGAGAAAT 74909
>seq407
Length=246863
Score = 93.3 bits (102), Expect = 5e-13
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 868717 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGG 868776
|||||||||||||| |||||| | ||| ||||||| |||||| | || |||||||
Sbjct 18733 CTCGAAAAAGTTGGCCTTGCCTTGGAGAGAGATCATCTCCATAAAGTCAAAGGGGTTGGC 18792
Query 868777 CGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGAT 868836
| || | ||| ||| || | | | || || |||||||| |||||||| ||
Sbjct 18793 AGAGTTCCAAATCTTCTCGTTGCCCAAAGCAACAAGAAGACGGTCGGCAACAAACTCAAT 18852
Query 868837 GTACTGGCACATGAGGCCGGCGTTCATGCCGATGAG 868872
||| ||||||||||| ||||||||| ||||| ||
Sbjct 18853 GTATTGGCACATGAGCTTGGCGTTCATACCGATAAG 18888
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107092833454105
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |