Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq407 116 3e-21
>seq407
Length=246863
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
|||||||||||| | || || | ||||| |||||||| || || ||||| || | |
Sbjct 33777 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCT 33836
Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
||||| | || |||| ||| | ||||| || ||||| ||||| || ||||| |||||
Sbjct 33837 GACACTATCGACAACGTTAAGGC-GAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCA 33895
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||||| ||||| ||||| || ||||| || |||||| | | | || || || ||
Sbjct 33896 GCAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAA 33955
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||| |||||||| || || || ||| | || | || |||| || ||
Sbjct 33956 CATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 34003
Score = 98.7 bits (108), Expect = 9e-16
Identities = 138/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784
|| || ||||| || || || |||||||| ||| | | ||| || | || | || ||
Sbjct 34079 CTTACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 34138
Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844
|||||||||||||| || || || || || ||||| ||||| | ||||| |||||
Sbjct 34139 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 34198
Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904
||||| || || ||| ||| | || ||||| || ||||||||||| || || ||
Sbjct 34199 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTC 34258
Query 24905 CACTTGGTGTTGCG 24918
|| | || |||||
Sbjct 34259 CATCTCGTCTTGCG 34272
Score = 93.3 bits (102), Expect = 4e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| ||||| || || | || || || |||||||| ||||| || || ||||| || |
Sbjct 32987 ACCATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCT 33046
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
||||||| | || | || || |||||||| ||||| || || || ||||| ||
Sbjct 33047 TCCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGAC 33106
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859
|| ||||| ||||||||||| || || ||||| || |||
Sbjct 33107 CAGCAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGAT 33145
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | ||||| || ||||| ||||| ||||| || ||||| ||| | |
Sbjct 33270 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 33329
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
|| || | || | || || |||||||||||||| || || || || || || ||
Sbjct 33330 GATACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 33389
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| || ||||| || ||||| || || || || || ||| | || || || ||
Sbjct 33390 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAT 33449
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918
|| |||||||| || || || || | || |||||
Sbjct 33450 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCG 33484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449894422598200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |