Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq57 95.1 9e-14 seq355 93.3 3e-13 seq181 93.3 3e-13 >seq57 Length=209335 Score = 95.1 bits (104), Expect = 9e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327 ||||| |||||| || |||||||||| || || || || || || || | || Sbjct 190628 AAGAGAGACATCAAAAGTACCACCACCCAAGTCGAAGATGAGGACGTTTCGCTCCTCCTC 190569 Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387 || | |||||||| || |||| ||| |||||||| ||||| |||||||| | | Sbjct 190568 GGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAGTAGGTTCGTTAATAATACGGAG 190509 Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 || | |||||||||||| || || || |||||||| | | || |||||||| || Sbjct 190508 CACCTCAAGACCAGCAATGGCACCGGCGTCCTTAGTGGCGAGACGCTGAGAATCGTTGAA 190449 Query 282448 ATATGCAGGAAC 282459 || |||||||| Sbjct 190448 GTAGGCAGGAAC 190437 >seq355 Length=82685 Score = 93.3 bits (102), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 282668 || || || || ||||||| ||||| || | ||||| || || || ||||| | | Sbjct 534 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAACTTAC 591 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 || || || || || ||||| |||| ||| ||| ||||| | |||| |||||| | Sbjct 592 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGATTCT 651 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 | || ||||| || || || |||| | || | || | |||||||||||| ||||| | Sbjct 652 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 711 Query 282789 GATTACCTTGATCATTCGC 282807 |||| || ||||| || || Sbjct 712 GATTGCCCTGATCGTTGGC 730 >seq181 Length=40626 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192 ||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || ||| Sbjct 20847 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 20906 Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252 ||||| ||||||||||| ||||||| | | ||||| | | || || | || | Sbjct 20907 GCTGAGACTGGTTATATCCAAAGAAGATTGGTCAAAGCGATGGAGGACTTGAAGGTTGCT 20966 Query 435253 TATGATGGTACAGTGAGAAAT 435273 ||||||||||| ||||||||| Sbjct 20967 TATGATGGTACTGTGAGAAAT 20987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740602660887690