Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq57 95.1 9e-14
seq355 93.3 3e-13
seq181 93.3 3e-13
>seq57
Length=209335
Score = 95.1 bits (104), Expect = 9e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 282268 AAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC 282327
||||| |||||| || |||||||||| || || || || || || || | ||
Sbjct 190628 AAGAGAGACATCAAAAGTACCACCACCCAAGTCGAAGATGAGGACGTTTCGCTCCTCCTC 190569
Query 282328 TTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAA 282387
|| | |||||||| || |||| ||| |||||||| ||||| |||||||| | |
Sbjct 190568 GGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAGTAGGTTCGTTAATAATACGGAG 190509
Query 282388 AACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447
|| | |||||||||||| || || || |||||||| | | || |||||||| ||
Sbjct 190508 CACCTCAAGACCAGCAATGGCACCGGCGTCCTTAGTGGCGAGACGCTGAGAATCGTTGAA 190449
Query 282448 ATATGCAGGAAC 282459
|| ||||||||
Sbjct 190448 GTAGGCAGGAAC 190437
>seq355
Length=82685
Score = 93.3 bits (102), Expect = 3e-13
Identities = 141/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 282611 ATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGG--TCATTAAAATCTC 282668
|| || || || ||||||| ||||| || | ||||| || || || ||||| | |
Sbjct 534 ATTACCTTGAAAGGCCAATGCTTCATGTCGGCCTGAAC--TTCGGCATCGTTAAACTTAC 591
Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728
|| || || || || ||||| |||| ||| ||| ||||| | |||| |||||| |
Sbjct 592 GGCCGATCAACCGCTTAGCATCGAAAACAGTGTTGTAAGGATTCATTGCAACTTGATTCT 651
Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788
| || ||||| || || || |||| | || | || | |||||||||||| ||||| |
Sbjct 652 TCGCGGCATCACCGATAAGTCGTTCAGAGTCATTGAAAGCAACATATGATGGTGTTGTTC 711
Query 282789 GATTACCTTGATCATTCGC 282807
|||| || ||||| || ||
Sbjct 712 GATTGCCCTGATCGTTGGC 730
>seq181
Length=40626
Score = 93.3 bits (102), Expect = 3e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 435133 GAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAACT 435192
||||| | ||||| | |||| |||||| |||||| | ||| |||| ||| | || |||
Sbjct 20847 GAATTCTGGTTCCACGCTATGGGTGGTCGAGAAGGTTTGATTGATACCGCTGTCAAGACT 20906
Query 435193 GCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGAA 435252
||||| ||||||||||| ||||||| | | ||||| | | || || | || |
Sbjct 20907 GCTGAGACTGGTTATATCCAAAGAAGATTGGTCAAAGCGATGGAGGACTTGAAGGTTGCT 20966
Query 435253 TATGATGGTACAGTGAGAAAT 435273
||||||||||| |||||||||
Sbjct 20967 TATGATGGTACTGTGAGAAAT 20987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740602660887690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |