Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq90 96.9 3e-15 seq407 91.5 1e-13 >seq90 Length=50681 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| || ||| | || | ||||||||||| || ||||| || ||||| Sbjct 24090 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 24149 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 ||| |||||| ||||| | || | ||||||| || ||| || |||| ||||| Sbjct 24150 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 24209 Query 133625 GGTTTTGCCGGTCAGA 133640 ||| || ||||| ||| Sbjct 24210 GGTCTTTCCGGTAAGA 24225 >seq407 Length=246863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514 ||| | ||| ||||| || || |||||||| ||| | || || || || || || Sbjct 33473 ATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTTCGGCCG--TCTTCAAGT 33416 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| |||| | ||||||||||| || ||||| || |||||||| |||| Sbjct 33415 TGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATC 33356 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | || | || || | | || || || | ||| | |||||||||| Sbjct 33355 TTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCG 33296 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| || ||||| Sbjct 33295 GTGAGGGTTTTGACGAAGATTTGCAT 33270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483417385840600