Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq90 96.9 3e-15
seq407 91.5 1e-13
>seq90
Length=50681
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| || ||| | || | ||||||||||| || ||||| || |||||
Sbjct 24090 GTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTT 24149
Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
||| |||||| ||||| | || | ||||||| || ||| || |||| |||||
Sbjct 24150 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGAT 24209
Query 133625 GGTTTTGCCGGTCAGA 133640
||| || ||||| |||
Sbjct 24210 GGTCTTTCCGGTAAGA 24225
>seq407
Length=246863
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGC 133514
||| | ||| ||||| || || |||||||| ||| | || || || || || ||
Sbjct 33473 ATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTTCGGCCG--TCTTCAAGT 33416
Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574
||||| || ||| |||| | ||||||||||| || ||||| || |||||||| ||||
Sbjct 33415 TGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTGGATC 33356
Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634
|| ||| | | || | || || | | || || || | ||| | ||||||||||
Sbjct 33355 TTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTTGCCG 33296
Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660
|| || ||||| ||||| || |||||
Sbjct 33295 GTGAGGGTTTTGACGAAGATTTGCAT 33270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483417385840600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |