Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq176 102 2e-16 seq18 91.5 3e-13 >seq176 Length=37993 Score = 102 bits (112), Expect = 2e-16 Identities = 313/478 (65%), Gaps = 7/478 (1%) Strand=Plus/Plus Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570 ||| || | || ||||| || | | || || ||||| || ||||| ||||| || ||| Sbjct 23586 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 23645 Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630 |||| || ||||| || || || | | || || |||||| ||||| |||| Sbjct 23646 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 23705 Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689 |||| || | || || | | || || | || ||| || |||| | | | | Sbjct 23706 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGTA-TCAT 23764 Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746 ||| ||| | ||| | | ||| ||| || ||| || | ||||||||||| | | Sbjct 23765 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGACCAAGGTGGTAACAAGCG 23824 Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806 ||| | || || |||||||| || |||||||| | ||| ||||||| ||| | || Sbjct 23825 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 23884 Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866 | | || || || || || || | |||| ||||| | || || || | || Sbjct 23885 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGACCTTTTCTACGCCCTCTG 23944 Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926 ||| || ||| | |||||||| ||||| || |||| ||| ||||||||||||| Sbjct 23945 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 24004 Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 | || | ||||| || | || ||||| || |||| |||||| | ||||| || Sbjct 24005 -CGCCGAGTGCCCTGGACTTGCCGACGTATACGGTGAAGAATTTGAAAAGCTTTATGA 24061 >seq18 Length=98311 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914 || ||||| || |||||||| || || ||||| || |||||||| || |||| ||| Sbjct 64247 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 64306 Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974 ||||| ||| | |||||| | || |||||||||||||| |||| || || | || ||| Sbjct 64307 ATCTTCTGGTTAAAGAAGAGGGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATC 64366 Query 131975 TCGAGAGATGAAGCATTGCATAC 131997 || ||||| | ||||||| Sbjct 64367 AGTAGGGATGAGGGGATGCATAC 64389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186804208587965