Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq176 102 2e-16
seq18 91.5 3e-13
>seq176
Length=37993
Score = 102 bits (112), Expect = 2e-16
Identities = 313/478 (65%), Gaps = 7/478 (1%)
Strand=Plus/Plus
Query 110511 CAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGAT 110570
||| || | || ||||| || | | || || ||||| || ||||| ||||| || |||
Sbjct 23586 CAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTACGAT 23645
Query 110571 GCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCAT 110630
|||| || ||||| || || || | | || || |||||| ||||| ||||
Sbjct 23646 ACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATTCAC 23705
Query 110631 GATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG-CTTCAACTGGACTTGT 110689
|||| || | || || | | || || | || ||| || |||| | | | |
Sbjct 23706 AATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGTA-TCAT 23764
Query 110690 TCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---G 110746
||| ||| | ||| | | ||| ||| || ||| || | ||||||||||| | |
Sbjct 23765 TCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGACCAAGGTGGTAACAAGCG 23824
Query 110747 AAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGA 110806
||| | || || |||||||| || |||||||| | ||| ||||||| ||| | ||
Sbjct 23825 TCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATTGA 23884
Query 110807 ACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTG 110866
| | || || || || || || | |||| ||||| | || || || | ||
Sbjct 23885 CTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGACCTTTTCTACGCCCTCTG 23944
Query 110867 GATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCC 110926
||| || ||| | |||||||| ||||| || |||| ||| |||||||||||||
Sbjct 23945 GATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGGACTCTTATGTGTCC 24004
Query 110927 TCATCG-TTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983
| || | ||||| || | || ||||| || |||| |||||| | ||||| ||
Sbjct 24005 -CGCCGAGTGCCCTGGACTTGCCGACGTATACGGTGAAGAATTTGAAAAGCTTTATGA 24061
>seq18
Length=98311
Score = 91.5 bits (100), Expect = 3e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 131855 ACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCT 131914
|| ||||| || |||||||| || || ||||| || |||||||| || |||| |||
Sbjct 64247 ACTAGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCA 64306
Query 131915 ATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATC 131974
||||| ||| | |||||| | || |||||||||||||| |||| || || | || |||
Sbjct 64307 ATCTTCTGGTTAAAGAAGAGGGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATC 64366
Query 131975 TCGAGAGATGAAGCATTGCATAC 131997
|| ||||| | |||||||
Sbjct 64367 AGTAGGGATGAGGGGATGCATAC 64389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186804208587965
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |