Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq407 98.7 2e-15 >seq407 Length=246863 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || |||||||| |||||| | ||||| || |||||| Sbjct 33780 CAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCTGAC 33839 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || ||||| ||| || || ||| Sbjct 33840 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 33899 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || || || || || || | || ||||| | ||| | |||| |||||| || Sbjct 33900 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 33959 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || |||||||| |||||||||||| Sbjct 33960 CAAAAGGAGTCTACCCTTCACCTTGTT 33986 Score = 96.9 bits (106), Expect = 8e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| ||||| || ||||| || || | ||||| ||||| ||||| || |||| Sbjct 33284 CAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGATACCATCGACAA 33343 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||| ||||| || || || || || ||| || || | || || Sbjct 33344 TGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATTTT 33403 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||||||||| | ||||| || | ||| | |||| ||||| |||| || ||||| Sbjct 33404 CGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAATATCCAAAAGGAGTC 33463 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || || || || ||| | || ||| Sbjct 33464 TACCCTCCATCTCGTCTTGCGTCTCCGA 33491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181812244725365