Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq176 178 2e-39
seq90 143 3e-29
seq407 120 4e-22
>seq176
Length=37993
Score = 178 bits (196), Expect = 2e-39
Identities = 718/1122 (64%), Gaps = 37/1122 (3%)
Strand=Plus/Minus
Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927
|||||||||| ||||||| | || | || ||||||||| || | | ||||||||
Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604
Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987
||| |||| || | ||| || |||||| || | |||||||| || || || |
Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544
Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042
|||| | ||| | ||| | || ||| | || || || |||| || | || |
Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484
Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102
|| | || |||||||| || ||||| | ||||| ||||| || ||||| || ||
Sbjct 24483 AAG-----CGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 24429
Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
|| || || |||| || ||||| | || | | || || || || || ||
Sbjct 24428 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTT 24372
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
||||||| ||| || || || || || |||| | ||| | |||| || |
Sbjct 24371 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 24312
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
|| | ||||| || | || || | ||| || ||||| ||||| | |
Sbjct 24311 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336
||||| | ||||| ||||| | ||| ||| || || || || | | ||||||
Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| ||| |||| |||||||||||| ||||| || || || || || ||
Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135
Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453
| | ||| || || ||||| | || | |||| | | | | || ||| | ||
Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 24078
Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513
|| | |||||| | || || |||||| || ||||| |||||| || ||
Sbjct 24077 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCC 24018
Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573
|| || | | ||||| | ||||| ||| | ||| | || || |||||||||||
Sbjct 24017 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 23958
Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633
||| || | ||||| |||| | || || || | | || |||| || | ||| ||
Sbjct 23957 AAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATG 23898
Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693
||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| ||
Sbjct 23897 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 23838
Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747
|| | || ||||| ||| |||| | || || || |||||||||| |
Sbjct 23837 GAAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTA 23781
Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807
| || ||||| ||||| ||||| | || | |||||| || || ||| ||
Sbjct 23780 AGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 23721
Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867
|| || | | || || ||||| | |||||||| || || ||| ||||| || ||
Sbjct 23720 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 23661
Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927
||| | | ||||| | |||||||| | || ||||| ||||| |||| | |||||
Sbjct 23660 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601
Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969
||| ||||| || |||| || ||||| || ||||| ||
Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq90
Length=50681
Score = 143 bits (158), Expect = 3e-29
Identities = 296/432 (69%), Gaps = 14/432 (3%)
Strand=Plus/Plus
Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684
||| ||||||||||| || | ||||| | | |||||||| | || |||||| || |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743
||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| ||
Sbjct 42768 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826
Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802
| | ||||| |||| | ||| ||| ||| |||||||||||||| | | ||
Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 42885
Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862
|||||||||||||| ||||| ||||||||||| || || || || || || |||
Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945
Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918
||||| || ||| | || || || ||||| | ||| | | |
Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 43001
Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977
|||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| |
Sbjct 43002 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 43060
Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037
|||| | ||||||| | ||| ||| || | | || || | ||| ||| ||||
Sbjct 43061 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 43120
Query 182038 GACCATCCGCCA 182049
|||| || ||||
Sbjct 43121 GACCGTCGGCCA 43132
>seq407
Length=246863
Score = 120 bits (132), Expect = 4e-22
Identities = 124/160 (78%), Gaps = 2/160 (1%)
Strand=Plus/Plus
Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717
|||||| || |||||||||||| ||||| || || || || || |||||| |||||
Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112
Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776
||||||||||| |||||||| | ||| | |||| ||| ||| || || ||||||||||
Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGC-GAAAGAACCAGAGAAGAAGA 19171
Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816
|||||||||| ||||| |||| || || ||| ||||
Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628027564524000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |