Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq176 178 2e-39 seq90 143 3e-29 seq407 120 4e-22 >seq176 Length=37993 Score = 178 bits (196), Expect = 2e-39 Identities = 718/1122 (64%), Gaps = 37/1122 (3%) Strand=Plus/Minus Query 110868 CCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGG 110927 |||||||||| ||||||| | || | || ||||||||| || | | |||||||| Sbjct 24663 CCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAGG 24604 Query 110928 AACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAA 110987 ||| |||| || | ||| || |||||| || | |||||||| || || || | Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544 Query 110988 AGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAA-----TGCGTAGCGGCACAA 111042 |||| | ||| | ||| | || ||| | || || || |||| || | || | Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484 Query 111043 AATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA 111102 || | || |||||||| || ||||| | ||||| ||||| || ||||| || || Sbjct 24483 AAG-----CGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA 24429 Query 111103 CTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 || || || |||| || ||||| | || | | || || || || || || Sbjct 24428 GTTGCGGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTT 24372 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 ||||||| ||| || || || || || |||| | ||| | |||| || | Sbjct 24371 TGTAACAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTC 24312 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 || | ||||| || | || || | ||| || ||||| ||||| | | Sbjct 24311 TACGAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGA 24252 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTC---TTAATCGTCCCCAAATTCTTTTG 111336 ||||| | ||||| ||||| | ||| ||| || || || || | | |||||| Sbjct 24251 ATACTCCATGATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTG 24195 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| ||| |||| |||||||||||| ||||| || || || || || || Sbjct 24194 GTTGGACTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTG 24135 Query 111397 TGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGG-CGTTGGCCCGT-CC 111453 | | ||| || || ||||| | || | |||| | | | | || ||| | || Sbjct 24134 AGCCTCGAGGATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTT--CCCTTGCC 24078 Query 111454 CTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACC 111513 || | |||||| | || || |||||| || ||||| |||||| || || Sbjct 24077 CTGCCTCTCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCC 24018 Query 111514 TGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAA 111573 || || | | ||||| | ||||| ||| | ||| | || || ||||||||||| Sbjct 24017 AGGGCACTCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAA 23958 Query 111574 AAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTG 111633 ||| || | ||||| |||| | || || || | | || |||| || | ||| || Sbjct 23957 AAGATCGGAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATG 23898 Query 111634 GTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGC 111693 ||| | ||| |||| ||| || | | ||| |||||||| ||||||||||||| || Sbjct 23897 GTTCTTCCTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGC 23838 Query 111694 GATAGATCCCTTTCGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAA 111747 || | || ||||| ||| |||| | || || || |||||||||| | Sbjct 23837 GAAGGCACC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTA 23781 Query 111748 TACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTT 111807 | || ||||| ||||| ||||| | || | |||||| || || ||| || Sbjct 23780 AGCTCGGAGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC 23721 Query 111808 ATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGC 111867 || || | | || || ||||| | |||||||| || || ||| ||||| || || Sbjct 23720 CTTCGCACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGC 23661 Query 111868 ACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAA 111927 ||| | | ||||| | |||||||| | || ||||| ||||| |||| | ||||| Sbjct 23660 ACAGGTCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAA 23601 Query 111928 GCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAG 111969 ||| ||||| || |||| || ||||| || ||||| || Sbjct 23600 GCATGATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq90 Length=50681 Score = 143 bits (158), Expect = 3e-29 Identities = 296/432 (69%), Gaps = 14/432 (3%) Strand=Plus/Plus Query 181625 ACCCGTACCGATACCCTCGGTTCCATTCACGAGAACCATTGGTAAAGTTGGCATGTAAAA 181684 ||| ||||||||||| || | ||||| | | |||||||| | || |||||| || | Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767 Query 181685 GTCTGGTTCAATGGAGCGT-CCATCATCGTCCAAGTAGTTGAGGATCGGGTCATCCCGAG 181743 ||||||||||| | || | ||||| ||| ||||||||||||| | | |||||| || Sbjct 42768 ATCTGGTTCAAT-GCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAG 42826 Query 181744 GATCAAAGATCTTGCGAG-CCTCCTTGGTAAGTTTTGTGAAGATATACCTCGTTTGAGAA 181802 | | ||||| |||| | ||| ||| ||| |||||||||||||| | | || Sbjct 42827 GGTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCT 42885 Query 181803 GCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATG 181862 |||||||||||||| ||||| ||||||||||| || || || || || || ||| Sbjct 42886 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 42945 Query 181863 TTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACA----C 181918 ||||| || ||| | || || || ||||| | ||| | | | Sbjct 42946 TTGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGT----GGAAGTCAAACTGGC 43001 Query 181919 TTCACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCA 181977 |||||| ||||| || || | || |||| ||| || |||| ||| ||| || ||||| | Sbjct 43002 TTCACCATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGA 43060 Query 181978 TTTCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGA 182037 |||| | ||||||| | ||| ||| || | | || || | ||| ||| |||| Sbjct 43061 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 43120 Query 182038 GACCATCCGCCA 182049 |||| || |||| Sbjct 43121 GACCGTCGGCCA 43132 >seq407 Length=246863 Score = 120 bits (132), Expect = 4e-22 Identities = 124/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || |||||||||||| ||||| || || || || || |||||| ||||| Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAG-CGCAGAATGACCCGGAGAAGAAGA 122776 ||||||||||| |||||||| | ||| | |||| ||| ||| || || |||||||||| Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGC-GAAAGAACCAGAGAAGAAGA 19171 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 |||||||||| ||||| |||| || || ||| |||| Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAA 19211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628027564524000