Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq176 179 5e-40 seq407 127 3e-24 >seq176 Length=37993 Score = 179 bits (198), Expect = 5e-40 Identities = 718/1117 (64%), Gaps = 29/1117 (3%) Strand=Plus/Minus Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402 |||||| || |||| |||||||| | || || || || || | | ||||| || Sbjct 24662 CCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATA-GG 24604 Query 118403 GCCCTCAACCTCCGCCAA-TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAA 118461 || | || || ||| |||| | |||||| || || |||||||| || || || | Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544 Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAA 118521 | || | ||| | | || | ||||| |||| || |||| | || || | Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484 Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581 | | || |||||||| |||||||| || |||| || ||||| | ||| || || || | Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGC 24424 Query 118582 GAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638 | || ||| ||| ||||| | || | ||| || | | || || || || | Sbjct 24423 GGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAA 24367 Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 118698 ||||||| || || || || ||||||| | | ||| | |||| || | || Sbjct 24366 CAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGA 24307 Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758 | |||||| || | || || |||||||| |||| ||||| | || |||| Sbjct 24306 AGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACT 24247 Query 118759 CTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816 | || ||||| || || | ||| || | | | ||||| || | || |||||| || || Sbjct 24246 CCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGA 24189 Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876 ||| | ||| ||||||||||| ||||| || || || || ||||| | || Sbjct 24188 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTC 24129 Query 118877 GAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCC 118934 ||| || || ||| | | || | ||| | ||| | || || |||| | || Sbjct 24128 GAGGATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 24071 Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994 ||||| | || || |||||| |||||||| | || | || || || | Sbjct 24070 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCAC 24011 Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 119054 | | || || | |||| ||| | ||| | || || ||||||||||| || || Sbjct 24010 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 23951 Query 119055 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 119114 | ||||||||| || |||| || || ||| || | || || | || || || Sbjct 23950 GAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 23891 Query 119115 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 119174 | || || | ||||| | | ||| |||||||| || || || || | |||| | Sbjct 23890 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 23831 Query 119175 CCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228 || | |||| |||| | |||| || || | || ||||||| | | || Sbjct 23830 CC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 23774 Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGG 119286 ||||| ||||||||||| | ||| | ||||| || || || || ||| | || | Sbjct 23773 AGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCG 23716 Query 119287 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 119346 | | || || ||| ||||| | ||||||||| || || ||| ||||| || || || Sbjct 23715 CACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGG 23656 Query 119347 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 119406 | ||||| | ||||||| ||||| || |||||| |||| | || | ||||||||| Sbjct 23655 TCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATG 23596 Query 119407 TCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443 |||||||| || | ||| ||||| |||||||| || Sbjct 23595 ATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559 >seq407 Length=246863 Score = 127 bits (140), Expect = 3e-24 Identities = 122/154 (79%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || ||||||||||||||| || |||||||| || || |||||| ||||| Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133 ||||||||||| |||||||| | |||||| || | | | ||| || ||||||||||||| Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGA 19171 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167 | |||||||| || || |||| ||| ||||| Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 19205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618430832301400