Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq176 179 5e-40
seq407 127 3e-24
>seq176
Length=37993
Score = 179 bits (198), Expect = 5e-40
Identities = 718/1117 (64%), Gaps = 29/1117 (3%)
Strand=Plus/Minus
Query 118343 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 118402
|||||| || |||| |||||||| | || || || || || | | ||||| ||
Sbjct 24662 CCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATA-GG 24604
Query 118403 GCCCTCAACCTCCGCCAA-TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAA 118461
|| | || || ||| |||| | |||||| || || |||||||| || || || |
Sbjct 24603 TACCAAACTCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTCGA 24544
Query 118462 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAA 118521
| || | ||| | | || | ||||| |||| || |||| | || || |
Sbjct 24543 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 24484
Query 118522 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCC 118581
| | || |||||||| |||||||| || |||| || ||||| | ||| || || || |
Sbjct 24483 AAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGC 24424
Query 118582 GAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 118638
| || ||| ||| ||||| | || | ||| || | | || || || || |
Sbjct 24423 GGGC---CTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAA 24367
Query 118639 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACAT 118698
||||||| || || || || ||||||| | | ||| | |||| || | ||
Sbjct 24366 CAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGA 24307
Query 118699 ACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACT 118758
| |||||| || | || || |||||||| |||| ||||| | || ||||
Sbjct 24306 AGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACT 24247
Query 118759 CTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 118816
| || ||||| || || | ||| || | | | ||||| || | || |||||| || ||
Sbjct 24246 CCATGATTTCAGTACAGAGGTTACTGGATT--TGATGGTACCAAGGTGCTTTTGGTTGGA 24189
Query 118817 CTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTT 118876
||| | ||| ||||||||||| ||||| || || || || ||||| | ||
Sbjct 24188 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTC 24129
Query 118877 GAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGG-CGTTGGCTCGCCCCTCTTCC 118934
||| || || ||| | | || | ||| | ||| | || || |||| | ||
Sbjct 24128 GAGGATGGCGAACCAAAGCTTCTGG-GCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTC- 24071
Query 118935 TCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCC 118994
||||| | || || |||||| |||||||| | || | || || || |
Sbjct 24070 TCGTAGCTCTCATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCAC 24011
Query 118995 TTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCT 119054
| | || || | |||| ||| | ||| | || || ||||||||||| || ||
Sbjct 24010 TCGGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCG 23951
Query 119055 GGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGA 119114
| ||||||||| || |||| || || ||| || | || || | || || ||
Sbjct 23950 GAGATCCAGAGGGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTC 23891
Query 119115 CGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGAC 119174
| || || | ||||| | | ||| |||||||| || || || || | |||| |
Sbjct 23890 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 23831
Query 119175 CCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGA 119228
|| | |||| |||| | |||| || || | || ||||||| | | ||
Sbjct 23830 CC---AGGACGCTTGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 23774
Query 119229 AGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTGG 119286
||||| ||||||||||| | ||| | ||||| || || || || ||| | || |
Sbjct 23773 AGCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCC--CTTCG 23716
Query 119287 CTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACT 119346
| | || || ||| ||||| | ||||||||| || || ||| ||||| || || ||
Sbjct 23715 CACGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGG 23656
Query 119347 CCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGC 119406
| ||||| | ||||||| ||||| || |||||| |||| | || | |||||||||
Sbjct 23655 TCTTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATG 23596
Query 119407 TCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAG 119443
|||||||| || | ||| ||||| |||||||| ||
Sbjct 23595 ATGACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 23559
>seq407
Length=246863
Score = 127 bits (140), Expect = 3e-24
Identities = 122/154 (79%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074
|||||| || ||||||||||||||| || |||||||| || || |||||| |||||
Sbjct 19053 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 19112
Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGA 130133
||||||||||| |||||||| | |||||| || | | | ||| || |||||||||||||
Sbjct 19113 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATAGACGCGAAA-GAACCAGAGAAGAAGA 19171
Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTC 130167
| |||||||| || || |||| ||| |||||
Sbjct 19172 TACCCTCCACGGCAGCAAAAGCAATGAGTCGCTC 19205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618430832301400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |