Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq176 178 2e-39
seq407 170 2e-37
seq90 98.7 1e-15
>seq176
Length=37993
Score = 178 bits (196), Expect = 2e-39
Identities = 716/1117 (64%), Gaps = 27/1117 (2%)
Strand=Plus/Plus
Query 104336 CTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAG 104395
|| ||||| || ||||| || ||||||||||||| |||||||| | |||| |||
Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618
Query 104396 GAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGG 104455
|| ||||| || | |||||||| | ||||| | | ||||| || ||||| |||
Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678
Query 104456 GCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGG 104515
|| || |||||||| | ||||| || || | | || || || ||| ||
Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAGGGCTCCTACATTGCCGGT 23738
Query 104516 ACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGC 104575
|| |||||| | || | ||||| ||||| ||||| || | | |||||||||| ||
Sbjct 23739 ACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGA 23798
Query 104576 TATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCA 104629
|| || | |||| ||| ||||| || | |||| |||||||||||||
Sbjct 23799 TACGTTGACCAAGGTGGTAACAAGCGTCCT---GGTGCCTTCGCCATCTATCTTGAGCCT 23855
Query 104630 TGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCG 104689
|||||||| ||| | | || ||| |||| || | ||||| ||| | |||||||
Sbjct 23856 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 23915
Query 104690 CGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAG 104749
|| || || || |||| ||| |||||||| | ||||| ||||||||| | || ||
Sbjct 23916 CGAGCTCGTGACCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 23975
Query 104750 GAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTG 104809
||| ||||| |||| | ||||| | | || ||||| || |||| |
Sbjct 23976 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTATAC 24035
Query 104810 GGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTG-CGAC 104868
||||| || |||||| ||||| | ||||| || | ||| | | || | ||
Sbjct 24036 GGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGA-GAGGCAGGGCAAGGGAAGGAAAAC 24094
Query 104869 GGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
| ||| | || | | ||| || || ||| || |||||||||| || ||| |
Sbjct 24095 TATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGTCC 24153
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
| ||||| ||||| || || ||| ||| || |||||| | | ||| |
Sbjct 24154 CTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCA 24213
Query 104988 TCAA---GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGG 105044
|||| ||| || |||||||| |||||| |||| | | | ||||| |
Sbjct 24214 TCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGTTG 24270
Query 105045 CTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-ACA 105103
|||| ||||| || || || | ||||| || | || || | || || |
Sbjct 24271 CTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCGTC 24329
Query 105104 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTT 105163
| ||| | |||| || ||||| |||| || ||| || || ||||| ||| ||
Sbjct 24330 TATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTCGACACTGTA 24389
Query 105164 ATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGT 105220
|| | || | || || || |||| || || || || || ||| | || ||
Sbjct 24390 ATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATCGA 24446
Query 105221 CCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT 105280
|| ||||||| ||||| ||||||||||| || | ||||| |||| | ||
Sbjct 24447 CCTGTTGGTCTTGGTGTCCAGGGTCTCGCCGACGCTTTCATGGCCCTTCGCATGCCGTTC 24506
Query 105281 GATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT 105340
|| |||| || || | |||| ||||| | || || ||||| || |||||||| ||
Sbjct 24507 GACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATATCACGCGGCG 24566
Query 105341 CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 105400
||||||||| | || | || || | |||| | |||||| | | || ||||||
Sbjct 24567 CTTGAGGCGTCATGCGAACTTGCCGAAGAGTTTGGTACCTATGAATCTTACGAAGGTTCT 24626
Query 105401 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 105437
|| ||| | || | ||||| | || |||||||
Sbjct 24627 CCCATTTCTAAGGGTATCCTTCAGTACGACATGTGGG 24663
>seq407
Length=246863
Score = 170 bits (188), Expect = 2e-37
Identities = 216/289 (75%), Gaps = 10/289 (3%)
Strand=Plus/Minus
Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 94730
||||| |||| || |||||||| |||| || ||| | | ||||||| || || |
Sbjct 19337 CTCATCGACACTTACATTAAGGACACTGCTC-GACGAAACTTCCTCTTTGACGCTATGGA 19279
Query 94731 AACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 94787
|| |||| ||||| | |||||| || || |||||| | ||| | ||| |||
Sbjct 19278 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 19219
Query 94788 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 94847
|| ||| | || ||||||||| | || ||||| || |||||||||||||||||
Sbjct 19218 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 19162
Query 94848 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 94906
|||||| ||| ||| |||| | ||||| |||||||||||||||||||| |||||| ||
Sbjct 19161 TGGTTCTTTC-GCGTCTATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 19103
Query 94907 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955
|||| |||||||| |||||||| |||||||| |||||| || |||||
Sbjct 19102 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 19054
>seq90
Length=50681
Score = 98.7 bits (108), Expect = 1e-15
Identities = 281/427 (66%), Gaps = 4/427 (1%)
Strand=Plus/Plus
Query 168277 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 168336
||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | |
Sbjct 42708 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 42767
Query 168337 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 168396
||||| |||||| | |||||| || |||| |||||||| | |||||| ||
Sbjct 42768 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 42827
Query 168397 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 168455
| ||||| ||| | |||| || || ||||| |||||||| | | || |
Sbjct 42828 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 42886
Query 168456 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 168515
| || |||||||| ||||| |||||||| || || || || || |||||||| |
Sbjct 42887 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 42946
Query 168516 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 168575
|||| || | | ||| | || || |||||| ||| | | | | ||||||
Sbjct 42947 TGTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCAC 43006
Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 168634
| ||||| || || | ||||| | || | |||| ||| ||| || || || || ||
Sbjct 43007 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 43065
Query 168635 TCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 168694
| |||| || | ||| || | | | |||||| || || ||| ||||||||
Sbjct 43066 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 43125
Query 168695 TCCGCCA 168701
|| ||||
Sbjct 43126 TCGGCCA 43132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583256680720600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |