Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq407 185 3e-41
seq355 152 2e-31
seq352 107 6e-18
seq57 105 2e-17
seq18 84.2 7e-11
>seq407
Length=246863
Score = 185 bits (204), Expect = 3e-41
Identities = 182/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | |||||||| ||||| |||||||| ||||| || || |
Sbjct 34011 TTTGCATACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGT 33952
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || ||||| ||||||||||| |||||||| || | ||||||||||
Sbjct 33951 AGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGAT 33892
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||||||||| ||||| || |||||||| || || || || || || || | ||||| |
Sbjct 33891 CAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACG 33832
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| |||||||| || | || |||||||| | || || ||||| ||||||||
Sbjct 33831 ACTCGACTTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 149 bits (164), Expect = 2e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 140505 TACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAA 140564
||||||||||| || | | | || ||||| ||||| ||||| ||||||||||| |||
Sbjct 34290 TACATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAA 34231
Query 140565 TCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCA 140624
|| || | ||||| |||||||||||||||||||| || ||||| || ||||||||||||
Sbjct 34230 TCGGAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCA 34171
Query 140625 GGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGT 140684
|| || || || || || || || || || || || || || || || | ||| | |
Sbjct 34170 GGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGAT 34111
Query 140685 TCAACTTCAAGTGTAACTGTCTTTCCGGTTAG 140716
|| ||||| || || | |||||| || || ||
Sbjct 34110 TCGACTTCGAGAGTGATTGTCTTACCCGTAAG 34079
Score = 145 bits (160), Expect = 2e-29
Identities = 173/235 (74%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| ||||||||| || | | | || ||||| || |||||||| ||||| ||||| |
Sbjct 33504 TTTGCATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGT 33445
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | ||||| || ||||||||||| ||||| || || || | || ||||| |
Sbjct 33444 AGTCGGAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGT 33385
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
|||| || || || || || || || || || || || ||||| || || | ||||||
Sbjct 33384 CAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGC 33325
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
||| |||||||| |||| || || ||||| || ||||| || || || |||||
Sbjct 33324 TTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 141 bits (156), Expect = 3e-28
Identities = 137/176 (78%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 140562 TAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGA 140621
|||||||| || ||||| ||||| || ||||| ||||| || ||||| | ||||| ||
Sbjct 33673 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 33614
Query 140622 TCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGAT 140681
|||||||| || || || || |||||||| || || || ||||| ||||| | |||||
Sbjct 33613 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 33554
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||| || | ||||||||||| || || || || ||||| |||||
Sbjct 33553 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Score = 114 bits (126), Expect = 4e-20
Identities = 120/158 (76%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 140580 CCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCT 140639
||||||||||| || || ||||||||||| | |||||||| |||||||| || || ||
Sbjct 33147 CCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCC 33088
Query 140640 TTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTA 140699
|| ||||| || || || || ||||| || || | || || | || |||||||| ||
Sbjct 33087 TTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACTTCAAGAGTG 33028
Query 140700 ACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| ||||| ||||| || || || || ||||| |||||
Sbjct 33027 ATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
>seq355
Length=82685
Score = 152 bits (168), Expect = 2e-31
Identities = 255/369 (69%), Gaps = 0/369 (0%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
|| ||||| ||||| || |||||| | ||| |||||||| | |||||| || || |
Sbjct 415 CCTGAAGAGATTTCTTCCATGGTTCTTACTAAGATGAAGGAGACTGCTGAGGCTTACCTT 356
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| |||| || || ||||| || || || | || |||
Sbjct 355 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 296
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | |||| || | || || || ||
Sbjct 295 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 236
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | ||| || || || ||
Sbjct 235 CCTACTGCCGCTGCTATCGCTTACGGCCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 176
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| ||||| || || | || |||| |||||
Sbjct 175 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 116
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
|| || || || || || || |||||||| || || |||||||| || || ||||| ||
Sbjct 115 ATCTTCGAGGTCAAGGCTACCGCTGGTGACACTCACCTTGGTGGTGAGGACTTTGACAAC 56
Query 349892 CGTCTCGTT 349900
|| || |||
Sbjct 55 CGACTTGTT 47
>seq352
Length=69407
Score = 107 bits (118), Expect = 6e-18
Identities = 205/302 (68%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||||||||| || || ||||| | | || |||||||| | |||||| || || |
Sbjct 69106 CCCGAAGAAATCTCTTCCATGGTCCTTATCAAGATGAAGGAGACTGCTGAGGCTTACCTT 69165
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|||| || || | | || ||| |||| || || ||||| || || || | || |||
Sbjct 69166 GGTGGCACCGTCTCCAAGGCCGTTGTTACCGTCCCCGCCTACTTCAACGACTCTCAACGT 69225
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
|| || || || ||||| |||||| || | |||| || | || || || ||
Sbjct 69226 CAGGCTACCAAGGACGCTGGTGCCATTGCCGGTCTCGATGTCCTCCGTATCATCAACGAG 69285
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
|| ||||| || || || || || || ||||| || | | ||| || || || ||
Sbjct 69286 CCTACTGCCGCTGCTATCGCTTACGGTCTTGACAAGAAGTCTGAGGGCGAGAAGAACGTT 69345
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| || || || | |||||||||||||| ||||| || || | || |||| |||||
Sbjct 69346 TTGATCTTCGACCTTGGTGGTGGTACTTTCGATGTCTCTCTTTTGACTATTGAGGAGGGT 69405
Query 349832 AT 349833
||
Sbjct 69406 AT 69407
>seq57
Length=209335
Score = 105 bits (116), Expect = 2e-17
Identities = 187/271 (69%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681
|| || ||||| || || ||| | |||||| || || || || || || ||||||
Sbjct 190437 GTTCCTGCCTACTTCAACGATTCTCAGCGTCTCGCCACTAAGGACGCCGGTGCCATTGCT 190496
Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741
|| | | || || | || ||||| ||||| |||||||| || ||||| || || |||
Sbjct 190497 GGTCTTGAGGTGCTCCGTATTATTAACGAACCTACTGCTGCCGCTATTGCCTACGGTCTT 190556
Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801
|| | | || || | || ||| | || || || || || |||||||||||||||
Sbjct 190557 GACGAGAAGACCGAGGAGGAGCGAAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTT 190616
Query 349802 GATGTATCACTACTAACACTTGAAG--AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
||||| || || || || || | | | || | || || || || ||||||||||
Sbjct 190617 GATGTCTCTCTTCTTACCATTCAGGGCAAGG--TCTTCTCTGTCAAGGCCACTGCTGGTG 190674
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAA 349890
| || ||||||||||| || || || || ||
Sbjct 190675 ACACTCATCTTGGTGGTGAGGACTTCGACAA 190705
>seq18
Length=98311
Score = 84.2 bits (92), Expect = 7e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 223710 CTGTATGTAATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTA 223769
||||||| | ||||||| || || || || ||||||||||| | ||||||||| |
Sbjct 64391 CTGTATGCATCCCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCA 64332
Query 223770 AACCTCTCTTTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTA 223829
| || ||||| || | ||| || ||||| ||||| || ||||| || || ||||| |
Sbjct 64331 ACCCCCTCTTCTTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCA 64272
Query 223830 CACAAGCAAACGCTAC 223845
| || ||||| || ||
Sbjct 64271 CGCATGCAAAAGCCAC 64256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515243430978695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |