Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq176 172 6e-38
seq90 158 1e-33
>seq176
Length=37993
Score = 172 bits (190), Expect = 6e-38
Identities = 450/679 (66%), Gaps = 8/679 (1%)
Strand=Plus/Plus
Query 53294 CTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAG 53353
|| |||||||| ||||| | || || ||||| |||||||| ||||| ||||||
Sbjct 23559 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 23618
Query 53354 GATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGG 53413
|||||||| || || || |||||||| || |||||| ||||| || |||||||||
Sbjct 23619 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 23678
Query 53414 TCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGG 53472
| |||||||| ||| | ||| | | | || |||||||||| ||| | || ||
Sbjct 23679 GCCGGTGGTATTGGTCTTCACATTCAC-AATATCCGTGCGAAGGGCTCCTACATTGCCGG 23737
Query 53473 GACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCG 53532
|| || || | || | || ||| | ||||||||||| | | | || ||| || ||
Sbjct 23738 TACCAATGGTTACTCCAACGGTATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTCG 23797
Query 53533 GTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTG 53592
||||| |||| |||||| ||||| || | ||||||||||| || ||||| ||
Sbjct 23798 ATACGTTGACCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTG 23857
Query 53593 GCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCG 53652
|||||| || | | || || | || | | ||| || ||| | || ||| | ||
Sbjct 23858 GCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTACG 23917
Query 53653 CTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGA 53711
|||||||| || ||| || || ||||| | || || |||||| || ||| ||
Sbjct 23918 AGCTCGTGACCTTTTCTAC-GCCCTCTGGATCTCCGATCTTTTCATG--AAGCGTGTCGA 23974
Query 53712 A--GGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTA 53769
| || | ||| ||| || ||||| || ||||||||| || || | || ||
Sbjct 23975 ATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTATA 24034
Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAA 53829
|||||| || ||| | || | ||| || |||| |||||| | ||| |
Sbjct 24035 CGGTGAAGAATTTGAAAAGCTTTATGAGAGCTACGAGAGGCAGGGCAAGGGAAGGAAAAC 24094
Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889
|||| || | || | ||| || |||||| || || || || || ||
Sbjct 24095 TATCAAAGCCCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAAACCGGTGTCCC 24154
Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949
||||| |||||||||||| | | |||| ||| |||||| ||| || | || |||
Sbjct 24155 TTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTACCAT 24214
Query 53950 CAAATCGAGCAACTTATGT 53968
|||||| || ||| | |||
Sbjct 24215 CAAATCCAGTAACCTCTGT 24233
>seq90
Length=50681
Score = 158 bits (174), Expect = 1e-33
Identities = 292/426 (69%), Gaps = 2/426 (0%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| ||||||||||| |||| | ||| || ||| || | | | |
Sbjct 42709 CCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATAA 42768
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| || || | ||| ||| || || | ||| ||||||| | | | || ||
Sbjct 42769 TCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGGG 42828
Query 117272 TCGAATATGTTCTTG-GTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGC 117330
| ||| || | || | ||| | ||| ||| ||||| || ||||||| || ||
Sbjct 42829 TGGAAGAT-TGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTGC 42887
Query 117331 ATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390
|| || ||||| |||||||| ||||| ||||| || | || |||| || || | |||
Sbjct 42888 GTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGTT 42947
Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450
||| ||| || |||||||| || ||| |||||| || | || || |||||
Sbjct 42948 GTTACTGCCGACGAAGTTTTGTGCTAAGCCGACAATGGTGGAAGTCAAACTGGCTTCACC 43007
Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510
||||||||| || || | ||||| |||||||| || |||||||| ||||| || |||
Sbjct 43008 ATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTCTTT 43067
Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570
|| ||||| ||||| || || | | ||||| ||||||| || || ||||| ||
Sbjct 43068 GGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCGTC 43127
Query 117571 CGCCAC 117576
|||||
Sbjct 43128 GGCCAC 43133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547212135287000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |