Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq407 179 4e-40
seq176 179 4e-40
seq18 109 6e-19
seq90 95.1 1e-14
>seq407
Length=246863
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| | ||||| || ||||| |||||||| || ||||| |
Sbjct 33777 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCT 33836
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | || | ||||| || |||||||||||||| || |||||||| || |||
Sbjct 33837 GACACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 33896
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| || | |||||||||||||| ||||| ||||||| |||||| || | ||||| ||
Sbjct 33897 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 33956
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || ||||| || || | ||||| || |||||
Sbjct 33957 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGG 34003
Score = 167 bits (184), Expect = 3e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| ||||| || || |||||||| || ||||| ||||| || || |
Sbjct 33270 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 33329
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | ||| | ||||| || || || ||||||||||| || || || ||||||
Sbjct 33330 GATACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 33389
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | ||||| || || |||||||| || || | || || || | ||||| |||
Sbjct 33390 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAAT 33449
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||||| || || || ||||| ||||||||||| || |||||
Sbjct 33450 ATCCAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGAGGTGG 33496
Score = 152 bits (168), Expect = 6e-32
Identities = 132/164 (80%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| |||||||| |||||||| |||||||||||||| || |
Sbjct 33498 ATGCAAATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 33557
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||||| || ||||||||||||||||| || ||||| |||||
Sbjct 33558 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 33617
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
|| || | || || || || |||||||| ||||||| ||| ||
Sbjct 33618 CAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAAC 33661
Score = 134 bits (148), Expect = 2e-26
Identities = 124/157 (79%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || ||||| |||||||| |||||||| || |||||
Sbjct 32990 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 33049
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || |||||||||||||| || ||||| ||||||
Sbjct 33050 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAG 33109
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
|| || | || |||||||||||||| || || ||||
Sbjct 33110 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATG 33146
Score = 132 bits (146), Expect = 5e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
||||| || ||||| || ||||| || || || || | |||| ||| | || | |||
Sbjct 34079 CTTACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGCGATACCATCGACAACGTCAAG 34138
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
|| || || || ||||||||||| || || || || ||||| || || || || || ||
Sbjct 34139 GCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGA 34198
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
|| ||||| || |||| || || || | || || ||| | |||||||| ||||||||
Sbjct 34199 AAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCACTCTC 34258
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| ||||||||||| || |||||
Sbjct 34259 CATCTCGTCTTGCGTCTCCGAGGTGG 34284
>seq176
Length=37993
Score = 179 bits (198), Expect = 4e-40
Identities = 660/1016 (65%), Gaps = 27/1016 (3%)
Strand=Plus/Minus
Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTAC 80598
||||||||||||| ||| | ||| |||| || ||||| || || | | || ||
Sbjct 24664 CCCCACATGTCGTACTGAAGGATACCCTTAGAAATGGGAGAACCTTCGTAAGATTCATAG 24605
Query 80599 GGGCCCTCCGTCTT-GGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTC 80657
| || | |||| ||| || || || ||| || ||| ||||||||||| || |||
Sbjct 24604 GTACCAAAC-TCTTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGATATATCGTCTC 24546
Query 80658 AAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCAT 80717
|||| | || | | | |||| | | |||||||| || || | |||
Sbjct 24545 GAAGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCAT 24486
Query 80718 GAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TC 80776
||| |||| || || ||||| || || | | | || || |||||| |||| || |
Sbjct 24485 GAAAGCGTCGGCGAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTT 24426
Query 80777 GCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAA 80836
|| |||||| || | ||| || ||||| ||| || || ||||| |||||
Sbjct 24425 GCG-GGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCGAGGTTCTTTGTAA 24367
Query 80837 CAACCCGTGTAACATCATGAAGTTTCTGAAAGTC---GAATTG--GTTCCCCTTC-ACAA 80890
||||| |||| || || || || | ||||| || | |||| || || |
Sbjct 24366 CAACCTTGGTAATCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGA 24307
Query 80891 ATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACT 80950
| || ||||| || || || ||||| || || || || || |||| | | | |||
Sbjct 24306 AGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACT 24247
Query 80951 CGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACT 81010
| | |||||| || || | ||| || || || ||||| |||| || ||||| ||||
Sbjct 24246 CCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACT 24187
Query 81011 TGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGA 81070
||| |||| ||| ||||||||||| ||||| ||| |||||| ||| || | || ||
Sbjct 24186 TGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCGGTTTCGGTTTGAGCCTCGA 24127
Query 81071 GGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACAT 81130
|||||||| ||||| || | || |||| || | ||||| | | | |
Sbjct 24126 GGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCTTGCCCTGCCTCTCGT 24067
Query 81131 ACTTGGCGT-AAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCG 81189
| | | | |||||| || || | |||||| | || | || | |||||||||
Sbjct 24066 AGCTCTCATAAAGCTT-TTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCG 24008
Query 81190 TTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGG 81249
|| ||||| || ||| || ||| || ||| |||||||||| || | |
Sbjct 24007 GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAG 23948
Query 81250 ATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGC 81307
|||||||||||| ||| ||||| || ||| || ||||||| | ||| ||||| |
Sbjct 23947 ATCCAGAGGGCGTAGAAAAGGTCACG--AGCTCGTACCTCCTCCTTACCATGGTTCTTCC 23890
Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCG-AC 81366
|| || | ||||| | | || || ||||| ||||| ||||| | ||||| | ||
Sbjct 23889 TTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCAC 23830
Query 81367 -----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCA 81421
| |||| | ||||| |||| ||||| || || || |||| | | || |
Sbjct 23829 CAGGACGCTTGTTA---CCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGA 23773
Query 81422 ACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGC 81481
|||||| |||||||| | || | ||| || ||||| | || || ||||| || |
Sbjct 23772 GCATAGGAATGATACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCAC 23713
Query 81482 GCACCTTGCTGATTG-AAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACA 81536
| | ||| ||| || |||||| || ||||| | ||| || |||||||||||
Sbjct 23712 GGATATTG-TGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACA 23658
>seq18
Length=98311
Score = 109 bits (120), Expect = 6e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTA 64785
|||||||| || |||||||| ||||||||||||||||| || | | || |||||| ||
Sbjct 64259 GCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTA 64318
Query 64786 AAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAG 64845
|| ||| |||| ||||||| || ||| | ||||| |||||| ||||| | |||| |||
Sbjct 64319 AAGAAGAGGGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGTAGGGATGAG 64378
Query 64846 GGG 64848
|||
Sbjct 64379 GGG 64381
>seq90
Length=50681
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|||||||| ||||| || || || ||||| ||||| || | ||| | ||| | |||
Sbjct 24224 CTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAAG 24165
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| || || || ||||||||||| | || || || ||
Sbjct 24164 TCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGGA 24105
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
||||| |||||||| | | ||||| | |||||
Sbjct 24104 AAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 24070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570306372182800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |