Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq407 158 3e-33
seq90 123 6e-23
>seq407
Length=246863
Score = 158 bits (174), Expect = 3e-33
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| ||||||||||| || ||||| ||||||||||| || || | ||| || | |||||
Sbjct 33988 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 33929
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || || || || || || || | ||||| || |||||||||| ||||||||||||
Sbjct 33928 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 33869
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || ||||| ||||| |||||||| || || || |||||||| ||
Sbjct 33868 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTT 33809
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || | |||||| ||||| | ||||||
Sbjct 33808 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 145 bits (160), Expect = 2e-29
Identities = 127/158 (80%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || |||
Sbjct 33655 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 33596
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|||||||| ||||| || || || || |||||||||||| ||||||||| ||||||
Sbjct 33595 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 33536
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || |||||||| || || | |||||
Sbjct 33535 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Score = 138 bits (152), Expect = 3e-27
Identities = 147/193 (76%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || ||||||||||| ||||| || || ||||| | ||| || | ||||||||
Sbjct 34267 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 34208
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| || || || |||||||| || ||||| || ||||| || | || |||||||| ||
Sbjct 34207 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 34148
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081
|||||| || ||||| |||||||| || ||| ||| || ||||||||||| ||
Sbjct 34147 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCGAGAGTGATTGT 34091
Query 211082 CTTTCCCGTGAGA 211094
||| ||||| |||
Sbjct 34090 CTTACCCGTAAGA 34078
Score = 134 bits (148), Expect = 3e-26
Identities = 130/167 (78%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007
|| ||||| |||||||| |||||||| || || ||||| | ||||| |||||||||||
Sbjct 33156 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 33097
Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067
| || ||||||||||||||||| || || || ||||||||||| || || ||
Sbjct 33096 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 33037
Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| ||||| || ||||||||||| || || | |||||
Sbjct 33036 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964
||| || || || || ||||| |||||||| || || || | ||| || | || |||||
Sbjct 33479 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTTCGGCCGTCTTC 33420
Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024
|| ||||| || ||||| || | || || |||||||| || | || |||||||| ||
Sbjct 33419 AAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 33360
Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084
|||||| || || || |||||||| ||||||||||| || || || || || || ||
Sbjct 33359 GATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 33300
Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || || || || | |||||
Sbjct 33299 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
>seq90
Length=50681
Score = 123 bits (136), Expect = 6e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| || | ||||||||| || || || |||||||| || |||||||| | || || |||
Sbjct 24070 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 24129
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
||||| || | || ||||||||||||||||| || || || ||||||||||| |||
Sbjct 24130 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 24189
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094
|| |||||||| ||||| |||||||| || |||
Sbjct 24190 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 24225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159143608826225
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |