Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq407 158 3e-33 seq90 123 6e-23 >seq407 Length=246863 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| || ||||| ||||||||||| || || | ||| || | ||||| Sbjct 33988 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 33929 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | ||||| || |||||||||| |||||||||||| Sbjct 33928 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 33869 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| |||||||| || || || |||||||| || Sbjct 33868 TGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTT 33809 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | |||||| ||||| | |||||| Sbjct 33808 TTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777 Score = 145 bits (160), Expect = 2e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| ||||| ||||| || |||||||| | ||||||||||||||||| | || ||| Sbjct 33655 CCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCC 33596 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 |||||||| ||||| || || || || |||||||||||| ||||||||| |||||| Sbjct 33595 TTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTG 33536 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || |||||||| || || | ||||| Sbjct 33535 ATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498 Score = 138 bits (152), Expect = 3e-27 Identities = 147/193 (76%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || ||||||||||| ||||| || || ||||| | ||| || | |||||||| Sbjct 34267 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 34208 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || |||||||| || ||||| || ||||| || | || |||||||| || Sbjct 34207 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 34148 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGT 211081 |||||| || ||||| |||||||| || ||| ||| || ||||||||||| || Sbjct 34147 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCGAGAGTGATTGT 34091 Query 211082 CTTTCCCGTGAGA 211094 ||| ||||| ||| Sbjct 34090 CTTACCCGTAAGA 34078 Score = 134 bits (148), Expect = 3e-26 Identities = 130/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 || ||||| |||||||| |||||||| || || ||||| | ||||| ||||||||||| Sbjct 33156 AGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGG 33097 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | || ||||||||||||||||| || || || ||||||||||| || || || Sbjct 33096 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAAGACTCCACT 33037 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || ||||||||||| || || | ||||| Sbjct 33036 TCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 ||| || || || || ||||| |||||||| || || || | ||| || | || ||||| Sbjct 33479 GACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGAAAGAGTTCGGCCGTCTTC 33420 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || ||||| || ||||| || | || || |||||||| || | || |||||||| || Sbjct 33419 AAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCTTG 33360 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 |||||| || || || |||||||| ||||||||||| || || || || || || || Sbjct 33359 GATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGACTTCAAGGGTAATGGTTTT 33300 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || | ||||| Sbjct 33299 GCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270 >seq90 Length=50681 Score = 123 bits (136), Expect = 6e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || || | ||||||||| || || || |||||||| || |||||||| | || || ||| Sbjct 24070 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 24129 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 ||||| || | || ||||||||||||||||| || || || ||||||||||| ||| Sbjct 24130 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 24189 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || |||||||| ||||| |||||||| || ||| Sbjct 24190 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAGA 24225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159143608826225