Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq326 129 4e-25 >seq326 Length=71825 Score = 129 bits (142), Expect = 4e-25 Identities = 239/346 (69%), Gaps = 6/346 (2%) Strand=Plus/Plus Query 27382 TTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCC 27441 || |||||||| || | | ||| || |||||||| ||| |||||| ||||| ||| Sbjct 33450 TTTGGGTTCCAAGCCGATAAGATAATCCGCCTGTCAGTTGGATTGTTCTTGATGGTGTCG 33509 Query 27442 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG-TCCGTGTA 27500 | | ||||||| || || || || | || |||||| || || || ||||| Sbjct 33510 ATTACCCTTTGCAGTTGGTCGACTCCTTTGTCCTTATAGTCT-CCGTCGGCATCAGTGTA 33568 Query 27501 CTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT 27560 ||| || || ||||| ||||| |||||||||||||| |||||||| || || || || Sbjct 33569 CTCGGCACCAAAATGTCTCCACTGGAACCCGTACACAGGTCCCAGATCACCTTCCCTTCT 33628 Query 27561 GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTAC 27620 ||| ||| || ||| |||| || ||| || ||||| ||||||||||| ||| Sbjct 33629 GTGGCCGAGCCCGACCTTCTCCAGGAATTCTTTGCTTCCGTTACCGTCCCAGATCCCTAC 33688 Query 27621 CCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 27680 |||| |||||| | |||| || || | || |||||||||| ||||| | Sbjct 33689 GCCCTGACTAGAGAGCACCTTGGCGTCGGTACAGCCAGAAACGAACCACAAAAGCTCGGC 33748 Query 27681 CACGACGGCCTTCCAA--AAGACCCTCTTGGTCGTGAGGAGGGGAA 27724 | |||| | | || ||||| | |||||||| ||||| |||| Sbjct 33749 AATGACG--CCGCGAAGGAAGACGCGTTTGGTCGTCAGGAGAGGAA 33792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369504655596515