Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq176 91.5 2e-13
seq18 89.7 7e-13
>seq176
Length=37993
Score = 91.5 bits (100), Expect = 2e-13
Identities = 291/449 (65%), Gaps = 2/449 (0%)
Strand=Plus/Minus
Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974
||| ||| ||||||||| || || | || || | | ||||||||| || || ||
Sbjct 24059 ATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 24000
Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034
||| | | ||| || ||||| | || || ||||| || ||||| | ||||| ||
Sbjct 23999 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 23940
Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093
|| || || || || | || || || || || ||||| ||||| || |
Sbjct 23939 GGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 23881
Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153
|| || | | ||||| ||||| || || ||||| || || | | ||||| || |
Sbjct 23880 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 23821
Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213
| ||||| || || || | |||| || ||| | ||| ||| | ||| ||||| |
Sbjct 23820 TGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 23761
Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273
||||||| || ||||| || || | ||| || || | || || ||||| ||
Sbjct 23760 TACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 23701
Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333
|| | || || || || || |||| || || |||| || || | |||||||
Sbjct 23700 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 23641
Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362
||||||| || || ||||||| |||||
Sbjct 23640 AGATACCATCAATGGAGTCATCCTTCATG 23612
>seq18
Length=98311
Score = 89.7 bits (98), Expect = 7e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221
|| ||||| ||||| || || ||||| |||||||| || || ||||| | || | ||
Sbjct 64380 CCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCCCTCTTC 64321
Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281
|| | ||| || ||||| || ||||| ||||||||||| |||||||| ||| |||||
Sbjct 64320 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 64261
Query 48282 GC 48283
||
Sbjct 64260 GC 64259
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694663893901600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |