Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq176 91.5 2e-13 seq18 89.7 7e-13 >seq176 Length=37993 Score = 91.5 bits (100), Expect = 2e-13 Identities = 291/449 (65%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||| ||| ||||||||| || || | || || | | ||||||||| || || || Sbjct 24059 ATAAAGCTTTTCAAATTCTTCACCGTATACGTCGGCAAGTCCAGGGCACTCGGCGGGACA 24000 Query 77975 CATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAG 78034 ||| | | ||| || ||||| | || || ||||| || ||||| | ||||| || Sbjct 23999 CATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAG 23940 Query 78035 AGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTT-TTAAGATCGA 78093 || || || || || | || || || || || ||||| ||||| || | Sbjct 23939 GGCGTAGAAAAGGTCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAA 23881 Query 78094 GAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTT 78153 || || | | ||||| ||||| || || ||||| || || | | ||||| || | Sbjct 23880 TGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCT 23821 Query 78154 TATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAA 78213 | ||||| || || || | |||| || ||| | ||| ||| | ||| ||||| | Sbjct 23820 TGTTACCACCTTGGTCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGA 23761 Query 78214 TACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAA 78273 ||||||| || ||||| || || | ||| || || | || || ||||| || Sbjct 23760 TACCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAA 23701 Query 78274 TGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGT 78333 || | || || || || || |||| || || |||| || || | ||||||| Sbjct 23700 TGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGT 23641 Query 78334 AGATACCCTCTATACTGTCATCCATCATG 78362 ||||||| || || ||||||| ||||| Sbjct 23640 AGATACCATCAATGGAGTCATCCTTCATG 23612 >seq18 Length=98311 Score = 89.7 bits (98), Expect = 7e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 48162 CCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTT 48221 || ||||| ||||| || || ||||| |||||||| || || ||||| | || | || Sbjct 64380 CCCTCATCCCTACTGATCAACTCGTTTGAAAATGTCAGTCCAGGCATCAACCCCCTCTTC 64321 Query 48222 TTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAAT 48281 || | ||| || ||||| || ||||| ||||||||||| |||||||| ||| ||||| Sbjct 64320 TTTAACCAGAAGATTGCAGCAAAAGACCCAGAAAAGAAAATGCCTTCCACGCATGCAAAA 64261 Query 48282 GC 48283 || Sbjct 64260 GC 64259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694663893901600