Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq407 114 3e-20
>seq407
Length=246863
Score = 114 bits (126), Expect = 3e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| ||||| ||||| |||||||| |||||||||||||| |||| | ||| | |||||
Sbjct 33989 GAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 33930
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || ||| || || || || | | ||||| || | | || |||||||| ||
Sbjct 33929 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 33870
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
||||| || || || | || | |||| || ||| ||||||||||| |||||
Sbjct 33869 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGT 33810
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || | |||||| || |||| ||||||
Sbjct 33809 TTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 96.9 bits (106), Expect = 8e-15
Identities = 128/178 (72%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986
|||| |||| | ||| || |||||||| || || || || ||||| | | ||||
Sbjct 33167 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 33108
Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046
|||| | | ||| || ||||| || || || || |||||| | || | | |||| |
Sbjct 33107 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 33048
Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| ||| ||||||||||| ||||| || || ||||||||||| ||||| | |||||
Sbjct 33047 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 96.9 bits (106), Expect = 8e-15
Identities = 138/193 (72%), Gaps = 6/193 (3%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| ||||| ||||| ||||| ||||| || |||||||||| | ||||| ||||||||
Sbjct 34267 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 34208
Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
|| ||| ||||||||||| || | ||||| || | | ||| || ||||| |||||
Sbjct 34207 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 34148
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071
|| || ||||| | || | | | || ||| || ||||| ||||| || ||
Sbjct 34147 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCGAGAGTGATTGT 34091
Query 152072 TTTGCCCGTGAGA 152084
|| ||||| |||
Sbjct 34090 CTTACCCGTAAGA 34078
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984
||||||| | ||||||| ||||| || || ||||| ||||||||||| | | ||
Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 33618
Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044
||||| | | ||| || ||||| || ||||| || |||||| | || | | ||||
Sbjct 33617 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 33558
Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || |||||||| ||||| || || || |||||||| ||||| | |||||
Sbjct 33557 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153812447419115
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |