Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq407 114 3e-20 >seq407 Length=246863 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| ||||| ||||| |||||||| |||||||||||||| |||| | ||| | ||||| Sbjct 33989 GAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATC 33930 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || || || || | | ||||| || | | || |||||||| || Sbjct 33929 CTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC 33870 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || || || | || | |||| || ||| ||||||||||| ||||| Sbjct 33869 CTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGT 33810 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || | |||||| || |||| |||||| Sbjct 33809 TTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777 Score = 96.9 bits (106), Expect = 8e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCT 151986 |||| |||| | ||| || |||||||| || || || || ||||| | | |||| Sbjct 33167 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 33108 Query 151987 GGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTG 152046 |||| | | ||| || ||||| || || || || |||||| | || | | |||| | Sbjct 33107 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 33048 Query 152047 AACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||| ||||||||||| ||||| || || ||||||||||| ||||| | ||||| Sbjct 33047 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| ||||| ||||| ||||| ||||| || |||||||||| | ||||| |||||||| Sbjct 34267 GACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCATCTTC 34208 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||||||||| || | ||||| || | | ||| || ||||| ||||| Sbjct 34207 AAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTG 34148 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTC---TCTACTTCAAGAGTAATAGT 152071 || || ||||| | || | | | || ||| || ||||| ||||| || || Sbjct 34147 GATCTTGGCCTTGACGTTGTCGATGGTATC---GCTCGATTCGACTTCGAGAGTGATTGT 34091 Query 152072 TTTGCCCGTGAGA 152084 || ||||| ||| Sbjct 34090 CTTACCCGTAAGA 34078 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 151927 TGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTG 151984 ||||||| | ||||||| ||||| || || ||||| ||||||||||| | | || Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTT--CCGGCGAAGATCAATCGTTG 33618 Query 151985 CTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 ||||| | | ||| || ||||| || ||||| || |||||| | || | | |||| Sbjct 33617 TTGGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC 33558 Query 152045 TGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| || || || |||||||| ||||| | ||||| Sbjct 33557 AGAGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812447419115