Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq407 196 1e-44
seq90 120 6e-22
>seq407
Length=246863
Score = 196 bits (216), Expect = 1e-44
Identities = 180/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||||||||| || || || || || | || || ||||||||||||||||| |
Sbjct 34004 ACCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 33945
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || || |||||||| |||||||| || ||||| ||||| ||||| || ||| ||
Sbjct 33944 AAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGG 33885
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||| |||||||| || ||||| || || ||| | ||||||||||| || | |||||
Sbjct 33884 AATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCGATAGTGTCAGACGACTCGAC 33825
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| |||||||| || || || ||||||||||| || || ||||||||
Sbjct 33824 TTCAAGAGTGATAGTTTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777
Score = 156 bits (172), Expect = 9e-33
Identities = 157/204 (77%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || | || ||||| | ||| || ||||| || ||||| || |
Sbjct 34285 ACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGA 34226
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || |||||||| || |||||||| ||||| ||||| | ||||| || ||| ||
Sbjct 34225 AAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGG 34166
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||||||||||| || || ||| | ||||| || || | ||||||
Sbjct 34165 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTATCGCTCGATTCGAC 34106
Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075
|||||||||||| |||||||||||
Sbjct 34105 TTCGAGAGTGATTGTCTTACCCGT 34082
Score = 150 bits (166), Expect = 4e-31
Identities = 140/178 (79%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981
||||||| | || || | |||||| || || || || || ||||||||||| ||||| |
Sbjct 33167 TGTAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCT 33108
Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041
||||| || |||||||||||||| |||||||| || || || | ||||| ||||| |
Sbjct 33107 GGTCAGGAGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTGTCGG 33048
Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || ||||| |||||||| |||||||| || | |||||| ||||| || |||||
Sbjct 33047 AAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 32990
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || | || ||||| | || || |||||||| |||||||| |
Sbjct 33497 ACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAGTCGGA 33438
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| || || ||||| || ||||| || ||||| || || |||||| ||
Sbjct 33437 AAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGG 33378
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||||||||||||||||||||||| || || || | ||||| || || || ||||||
Sbjct 33377 GATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGTCGATGGTATCAGAGCTTTCGAC 33318
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||| || || || || || || || | || || ||||| || |||||
Sbjct 33317 TTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270
Score = 141 bits (156), Expect = 2e-28
Identities = 138/178 (78%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981
|||| |||| | || || |||||||| ||||| || ||||| |||||||| |||||||
Sbjct 33675 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 33616
Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041
||||| || |||||||||||||| || ||||| || || || | || || ||||| |
Sbjct 33615 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 33556
Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| | ||| || || |||||||| ||||| || || | |||||| ||||| || |||||
Sbjct 33555 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTCTTGACGAAAATTTGCAT 33498
>seq90
Length=50681
Score = 120 bits (132), Expect = 6e-22
Identities = 119/154 (77%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981
||||||||| ||| || | ||| ||||| || || || ||||| |||||||| || || |
Sbjct 24068 TGTAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCT 24127
Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041
||||| || |||||||||||||| |||||||| | || || | ||||| ||||| |
Sbjct 24128 GGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGG 24187
Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
| | ||||| ||||| ||||| ||||| || ||
Sbjct 24188 AGGACTCGACCTCGAGGGTGATGGTCTTTCCGGT 24221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046731622589510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |