Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175 45.1_202017-07-13] 565 sequences; 18,083,839 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq407 113 3e-20 >seq407 Length=246863 Score = 113 bits (124), Expect = 3e-20 Identities = 171/238 (72%), Gaps = 8/238 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| || | ||| || || || || || |||||||||||| ||||| Sbjct 33503 TTGCATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTA 33444 Query 44164 ATCGGC--GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| ||||| | || |||| || || ||||| ||||| || ||||| |||||||| Sbjct 33443 GTCGGAAAGAGTTCG-GC-CGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGG 33386 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 || | || | ||| ||||| || ||||| ||| || ||| | ||||| || | Sbjct 33385 TCAGGGGGGATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTGT--CGATGGTATCAG 33328 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || || | ||||| || || || |||||||| || |||||||||||||| Sbjct 33327 AGCTTTCGACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 33270 Score = 107 bits (118), Expect = 1e-18 Identities = 122/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || |||||||| || ||||||||||| || ||||| || | ||| | ||| ||||| Sbjct 33144 TCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTG 33085 Query 44243 TCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 ||| ||||| ||| || ||| | |||||||||| || ||||| || | || | Sbjct 33084 TCCTGGATCTTGGCCTTGACATTGT--CGATGGTGTCGGAAGACTCCACTTCAAGAGTGA 33027 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 | ||||| || ||||| ||||| ||||| ||||||||| ||| Sbjct 33026 TAGTCTTACCGGTGAGAGTCTTGACGAAAATTTGCATGGTGT 32985 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||||||||||||||| |||| || || | || || Sbjct 33985 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 33926 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || || || || ||||| ||||| || |||||||| | ||| | ||||||||| ||| Sbjct 33925 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 33866 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| || | || ||| | || ||||| | || || || || | || || || || Sbjct 33865 ATCTTC-GCCTTAACGTTGTCGATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTTTT 33807 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || | ||||| || ||||| ||||| Sbjct 33806 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 33777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987921128605