Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022175
45.1_202017-07-13] 565 sequences; 18,083,839 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq407 161 2e-34
seq90 138 3e-27
>seq407
Length=246863
Score = 161 bits (178), Expect = 2e-34
Identities = 167/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| ||||| ||||| || ||||| || ||||| || || |||||||| ||
Sbjct 33273 CAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCTGAT 33332
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| || ||||| || || ||||| || ||||||||
Sbjct 33333 ACCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAGCAG 33392
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || ||||||||||| || || ||||| || | |||||| |||| || || ||
Sbjct 33393 CGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGACTACAATATC 33452
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| || || || || ||||| || ||| | ||| ||
Sbjct 33453 CAAAAGGAGTCTACCCTCCATCTCGTCTTGCGTCTCCGA 33491
Score = 150 bits (166), Expect = 4e-31
Identities = 137/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || |||||||| || || || ||||| || || ||||| || |||
Sbjct 32993 CAAATTTTCGTCAAGACTCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCCGAC 33052
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || |||||||| |||||||||
Sbjct 33053 ACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCTGACCAGCAA 33112
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | ||||| || || || ||||| |||||||| |||||||| |||| ||
Sbjct 33113 CGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTA 33165
Score = 145 bits (160), Expect = 2e-29
Identities = 136/173 (79%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||||| || ||||| || ||||| || ||||| ||| ||| |||
Sbjct 33501 CAAATTTTCGTCAAGACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCTGAC 33560
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || || ||||| |||||||||||||| || || |||||||| ||||| |||
Sbjct 33561 ACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAACAA 33620
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| | |||||||||||||| || || || ||||| | ||| | | |||||
Sbjct 33621 CGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTA 33673
Score = 145 bits (160), Expect = 2e-29
Identities = 156/205 (76%), Gaps = 6/205 (3%)
Strand=Plus/Plus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACACCATCGAGAACGT 177997
||| || || || || ||||| ||||| || ||| ||| || |||||||| |||||
Sbjct 34078 TCTTACGGGTAAGACAATCACTCTCGAAGTCGAATCGAGC---GATACCATCGACAACGT 34134
Query 177998 CAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGC 178057
||| ||||| || ||||| || || ||||| || || ||||||||||| ||||||||
Sbjct 34135 CAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGC 34194
Query 178058 CGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAAC 178117
||||||||| || |||||||| | |||||| ||||||| || | ||||| || || ||
Sbjct 34195 CGGAAAACAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATTCAAAAGGAGTCCAC 34254
Query 178118 ACTGCATCTTGTTTTGAGACTCAGA 178142
|| ||||| || ||| | ||| ||
Sbjct 34255 TCTCCATCTCGTCTTGCGTCTCCGA 34279
Score = 140 bits (154), Expect = 8e-28
Identities = 155/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||| | || |||||||| ||||| || || || || || |||
Sbjct 33780 CAGATCTTTGTCAAGACTTTGACCGGAAAAACTATCACTCTTGAAGTCGAGTCGTCTGAC 33839
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || |||||||||||||| ||||| || ||||| || ||||||
Sbjct 33840 ACTATCGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAGCAA 33899
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || || || || ||||| || || ||||| | |||||| |||| || ||| ||
Sbjct 33900 CGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAACATC 33959
Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130
||||| || || || || || ||||||
Sbjct 33960 CAAAAGGAGTCTACCCTTCACCTTGTT 33986
>seq90
Length=50681
Score = 138 bits (152), Expect = 3e-27
Identities = 124/156 (79%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 177941 TCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAA 178000
||| || ||||| || |||||||||||||| || ||| ||||||||||| || |||||
Sbjct 24225 TCTTACCGGAAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATCGACAATGTCAA 24166
Query 178001 ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGG 178060
||||| |||||||| || || ||||| || |||||||| ||| | |||||||||||
Sbjct 24165 GTCCAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAGCGATTGATCTTCGCCGG 24106
Query 178061 AAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096
||| |||||||| || || ||||| ||| | || ||
Sbjct 24105 AAAGCAGCTCGAGGACGGCAGGACCCTTTCTGACTA 24070
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203722486114610
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |