Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 4e-28
seq479 118 1e-21
>seq1
Length=728537
Score = 140 bits (154), Expect = 4e-28
Identities = 183/253 (72%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193
||| || || ||| ||| ||||||||||||| | || | ||||| || || |||||
Sbjct 440820 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 440879
Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 24253
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 440880 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 440939
Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT---GTCATG 24310
|| || || || || ||||| ||||| |||| || || ||| | | ||||
Sbjct 440940 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 440999
Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 441059
Query 24371 AAAGAGATAGTTT 24383
|||||| |||||
Sbjct 441060 AAAGAGGAAGTTT 441072
>seq479
Length=110724
Score = 118 bits (130), Expect = 1e-21
Identities = 488/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 54009
|||||| || || || |||| | | | | |||||| || || | |||||||| | |
Sbjct 14434 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14493
Query 54010 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14494 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14553
Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 54127
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14554 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14611
Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187
| | ||||| ||||| || || | || |||| | | ||||| || ||||| ||
Sbjct 14612 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14671
Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 14672 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14731
Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 54306
|| ||||||||| |||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14732 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14790
Query 54307 ACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 54366
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 14791 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14850
Query 54367 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426
|| || |||||| ||||| | || || || ||||||||| | || |||
Sbjct 14851 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14910
Query 54427 TCCCGCATTAAATA---------------------AG----------------------- 54442
|| || || || | ||
Sbjct 14911 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 14970
Query 54443 -----GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAG 54497
||||| ||||| || || || | | ||||| | ||||| || ||||||||
Sbjct 14971 TTACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15030
Query 54498 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 54557
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15031 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15090
Query 54558 TTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 54617
|| || |||||| || || | || | ||| ||| | || | ||| || ||||| |
Sbjct 15091 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15150
Query 54618 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTT 54672
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15151 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593714935475040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |