Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq512 82.4 7e-11 >seq1 Length=728537 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | |||| || ||||| |||||||| ||||||||| Sbjct 455269 TACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGG 455210 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || || || || || ||||| ||| | || | |||||||| || || | Sbjct 455209 AAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGG 455150 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||||||| || || || || | |||| ||| || | ||| |||| Sbjct 455149 GGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGA 455090 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || | ||| | ||||||||||| || ||||| || || || ||||| Sbjct 455089 CTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | |||| |||||||| ||||| || ||||||||| Sbjct 456057 TACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGG 455998 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || || |||||||| ||| ||||||| || |||||||| || | Sbjct 455997 AAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGG 455938 Query 118630 GTATGCCCTCCTTGTCT 118646 | || |||||||||||| Sbjct 455937 GGATACCCTCCTTGTCT 455921 Score = 82.4 bits (90), Expect = 7e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 118561 TGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCT 118620 ||||||| || ||| || |||||| || || ||||| ||| |||| | || || | Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 455387 Query 118621 GATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG 118680 | || ||||| || ||||||||||| ||| || || || | || | |||||| | Sbjct 455386 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 455327 Query 118681 TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || ||||| | || | || || ||||| |||||||| || ||||||||||| Sbjct 455326 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 >seq512 Length=93957 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||||||||| ||||| ||| |||| | |||||||| || || || || ||||||||| Sbjct 79144 TCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTG 79203 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 || || || || || | |||| |||||| | | ||||||||||| ||| | Sbjct 79204 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCGAGGGTGATG 79263 Query 118704 GTTTTGCCGGTCAGA 118718 || || ||||| ||| Sbjct 79264 GTCTTTCCGGTAAGA 79278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825651997416