Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 149 8e-31
seq479 104 3e-17
>seq1
Length=728537
Score = 149 bits (164), Expect = 8e-31
Identities = 185/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640
||| || || ||| ||| ||||||||||||| | || | |||||||| || |||||
Sbjct 440820 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 440879
Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700
|| ||||| || || ||||| |||||||| || ||||| ||||| || || || |||||
Sbjct 440880 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 440939
Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757
||| || || || |||||||| ||||| |||| ||| || ||| | | ||||
Sbjct 440940 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 440999
Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817
||||| ||||||| |||||||||||| | |||||| || || || || || |
Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 441059
Query 33818 AAAGAGATAGTTT 33830
|||||| |||||
Sbjct 441060 AAAGAGGAAGTTT 441072
>seq479
Length=110724
Score = 104 bits (114), Expect = 3e-17
Identities = 484/775 (62%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247
||| || || || || |||| | | | | || ||| || || | |||||||| | |
Sbjct 14434 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14493
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14494 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14553
Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14554 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14611
Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 14612 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14671
Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || |||||
Sbjct 14672 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14731
Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544
|| |||||||||||||| || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14732 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14790
Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604
||| || || || || | || ||||| || || || | || || ||||| ||
Sbjct 14791 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14850
Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664
|| ||| ||||| ||||| | || || || ||||||||| | || | |||
Sbjct 14851 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14910
Query 63665 TCCCGCATTAAA------------------------------------------------ 63676
|| || || ||
Sbjct 14911 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 14970
Query 63677 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735
|| ||||| ||||| || || || | | ||||| | ||||| || ||||| ||
Sbjct 14971 TTACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15030
Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15031 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15090
Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855
|| ||||| ||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15091 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15150
Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910
| |||||||| | |||||||| || || |||||| | || | ||| |||||||
Sbjct 15151 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629810530297440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |