Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 149 8e-31 seq479 104 3e-17 >seq1 Length=728537 Score = 149 bits (164), Expect = 8e-31 Identities = 185/253 (73%), Gaps = 3/253 (1%) Strand=Plus/Plus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| || || ||| ||| ||||||||||||| | || | |||||||| || ||||| Sbjct 440820 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 440879 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAA 33700 || ||||| || || ||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 440880 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 440939 Query 33701 GATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 33757 ||| || || || |||||||| ||||| |||| ||| || ||| | | |||| Sbjct 440940 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 440999 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| ||||||| |||||||||||| | |||||| || || || || || | Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 441059 Query 33818 AAAGAGATAGTTT 33830 |||||| ||||| Sbjct 441060 AAAGAGGAAGTTT 441072 >seq479 Length=110724 Score = 104 bits (114), Expect = 3e-17 Identities = 484/775 (62%), Gaps = 55/775 (7%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||| || || || || |||| | | | | || ||| || || | |||||||| | | Sbjct 14434 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14493 Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 ||| || || || | || || ||||| || ||||| | ||||| || || || || Sbjct 14494 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14553 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63365 | ||||| | | || ||||| || || ||||| ||||| || | ||| | Sbjct 14554 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14611 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | | ||||| ||||| || || | || ||||| | | ||||| || ||||| || Sbjct 14612 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14671 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || ||||| Sbjct 14672 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14731 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT-TGATAG 63544 || |||||||||||||| || ||| || | ||||| ||||| ||| ||| || Sbjct 14732 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14790 Query 63545 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCC 63604 ||| || || || || | || ||||| || || || | || || ||||| || Sbjct 14791 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14850 Query 63605 TTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 || ||| ||||| ||||| | || || || ||||||||| | || | ||| Sbjct 14851 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14910 Query 63665 TCCCGCATTAAA------------------------------------------------ 63676 || || || || Sbjct 14911 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 14970 Query 63677 -TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63735 || ||||| ||||| || || || | | ||||| | ||||| || ||||| || Sbjct 14971 TTACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15030 Query 63736 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63795 || ||| || | | ||| || || || ||||| ||||| | |||||||||||| | Sbjct 15031 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15090 Query 63796 TTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63855 || ||||| ||| || || | | | ||| ||| | || | ||| || ||||| | Sbjct 15091 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15150 Query 63856 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 | |||||||| | |||||||| || || |||||| | || | ||| ||||||| Sbjct 15151 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810530297440