Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 4e-29
seq479 104 3e-17
>seq1
Length=728537
Score = 143 bits (158), Expect = 4e-29
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216
||| || || ||| ||| ||||||||||||| | || | ||||| || || |||||
Sbjct 440820 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 440879
Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 36276
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 440880 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 440939
Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATG 36333
|| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 440940 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 440999
Query 36334 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 36393
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 441059
Query 36394 AAAGAGATAGTTT 36406
|||||| |||||
Sbjct 441060 AAAGAGGAAGTTT 441072
>seq479
Length=110724
Score = 104 bits (114), Expect = 3e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 66474 GTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAG 66533
||||| ||||| || || || | | ||||| | ||||| || ||||| || || |
Sbjct 14976 GTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCACTTTG 15035
Query 66534 TCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593
|| || | | ||| || || || ||||| ||||| | |||||||||||| | ||
Sbjct 15036 TCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGCGCTCG 15095
Query 66594 ACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 66653
|| |||||| || || | | | ||| ||| | || | ||| || ||||| || |||
Sbjct 15096 ACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGAAGTAG 15155
Query 66654 TTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 66703
||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15156 TTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658165412010320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |