Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq1 98.7 8e-16
>seq1
Length=728537
Score = 98.7 bits (108), Expect = 8e-16
Identities = 151/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957
|| || | ||||| |||| ||||||||| | |||||||||||| | || || ||||
Sbjct 455252 AAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGTTCGGCCGTCT 455193
Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017
|| | ||| || ||||| |||||||||||||| || || | || | ||| || || ||
Sbjct 455192 TCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 455133
Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGT 43076
|||| | ||||| || | | || || ||| ||||| || | || || ||
Sbjct 455132 TGGATCTTGGCCTTGACATTGTCGATGGTATC-AGAGCTTTCGACTTCAAGGGTAATGGT 455074
Query 43077 TTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
||| ||||| || ||||| || || ||||||||
Sbjct 455073 TTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041
Score = 98.7 bits (108), Expect = 8e-16
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977
||||||||| | ||||| ||||| | ||||| | || || | |||||| || |||||
Sbjct 455739 CTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCAGCAAA 455680
Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTC 43036
||||||||| || ||||| | || | |||||| || || ||| ||| | | || ||
Sbjct 455679 AATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTC-CTGAATCTTCGCCTTAACGT 455621
Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096
|| | | ||||| | |||||| || | || ||||| |||||||| | ||| || |
Sbjct 455620 TGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGA 455561
Query 43097 CAAAAATTTGCAT 43109
|||| || |||||
Sbjct 455560 CAAAGATCTGCAT 455548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381365426148084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |