Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq1 158 2e-33
seq334 91.5 2e-13
seq479 84.2 3e-11
>seq1
Length=728537
Score = 158 bits (174), Expect = 2e-33
Identities = 233/329 (71%), Gaps = 6/329 (2%)
Strand=Plus/Minus
Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA---TCCG 125315
|||||| | ||| | || | |||||| || || |||| |||||| || | |
Sbjct 441137 GAGAACATCCACGCCGAGACCTACTCTCTCCTCATCGACACCTACATTAAGGACACTGCC 441078
Query 125316 CAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375
| ||| || | | |||||| |||| || ||||| | || | ||| || || |||||
Sbjct 441077 CGACGAAA---CTTCCTCTTTGACGCTATGGACACCATTCCTTGTATCCGAAAGAAGGCC 441021
Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435
| |||| |||| |||||| |||| | || |||| | || ||| |||| | ||
Sbjct 441020 GACTGGGCTCTTCGATGGATCTCTGACCAAAAATCTTGTTTCGGCGAGCGACTCATTGCT 440961
Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495
|| || ||||| ||||| |||||||| || ||| ||| ||| ||||||| ||||| |||
Sbjct 440960 TTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGCTTAAG 440901
Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555
||||| || |||||||| || || || | ||||||| | || ||||||||||||||
Sbjct 440900 AAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACGAGGGT 440841
Query 125556 CTACACTGTGACTTTGCCATTCTACTGTT 125584
|| ||| ||||||||| ||| || ||
Sbjct 440840 CTCCACACCGACTTTGCCTGTCTCCTCTT 440812
>seq334
Length=594113
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 70301 AAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAAC 70360
||| | || ||| | ||||||||||| | ||| | ||||||||||| || || |||
Sbjct 343021 AAACTTTCTTGCCTGATGTATCAGAGATCTTGTGACTTAGGCCTCGGTGTCCCATTCAAC 343080
Query 70361 ATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGC-CTGAAAGCGCA 70419
||||| || | |||| || || |||||||| | |||||||| | ||| || ||||
Sbjct 343081 ATTGCGTCTTACGCATTGTTAACCCATATGATTGCCCTCATTACCGACACTG-AACCGCA 343139
Query 70420 CGAGTTCGTAC-ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||||| | | ||| || || || || || ||||| | |||| | || ||||| |
Sbjct 343140 TGAGTTTATTCTACA-GATGGGGGATGCGCATGTGTACAGAGATCATGTTGAACCATTGA 343198
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519
|| |||| | ||| |||| || ||| ||| |||||| ||
Sbjct 343199 AGACGCAATTGGAAAGGGAACCTAGAGATTTCCCCAAGTTG 343239
>seq479
Length=110724
Score = 84.2 bits (92), Expect = 3e-11
Identities = 171/254 (67%), Gaps = 0/254 (0%)
Strand=Plus/Minus
Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923
||||||||| || || || || || || || || || | ||| |||| | || |||
Sbjct 14688 CGATACGTTGATCAAGGTGGTAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGCCT 14629
Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983
|||||||| || || |||||||| || || | | || ||| ||| || |||| |
Sbjct 14628 TGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGGTA 14569
Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043
||||| | || | || || || |||||| | | ||| | ||||||||||| ||| |
Sbjct 14568 CGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCGAA 14509
Query 97044 GACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGG 97103
|| ||| | |||| || ||||| |||| | || || || || |||| |
Sbjct 14508 TCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTTAC 14449
Query 97104 GGCGAAGAGTTTGA 97117
|| ||||| |||||
Sbjct 14448 GGTGAAGAATTTGA 14435
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741050881610480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |