Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 127 5e-24 >seq1 Length=728537 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || || ||||| || || || ||||||| || ||||| Sbjct 456037 ACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGTTCGGCCATCTTCA 455978 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| || || || || | || |||||||| || || || || || || || Sbjct 455977 AGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACCCTCCTTGTCTTGG 455918 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || ||||| || | ||||||||| | ||| || || || || || |||||| Sbjct 455917 ATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAGAGTGATTGTCTTA 455858 Query 104531 CCAGTAAG 104538 || ||||| Sbjct 455857 CCCGTAAG 455850 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||| || ||||| | ||| || || |||||||| ||| Sbjct 455744 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGTTTACCA 455685 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||||||||| || ||||| || ||||||||||| || || Sbjct 455684 GCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGAATCTTCGCCTTA 455625 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || |||| || || | || || || || || |||||||| || || | || Sbjct 455624 ACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTTTCCGGTCAAAGTC 455565 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 455564 TTGACAAAGATCTGCAT 455548 Score = 120 bits (132), Expect = 7e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 || ||||| | ||||| ||| || || ||||| ||||| || || || | | ||||| Sbjct 455444 TAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGG 455385 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || ||||||||||| || || ||||| || | ||| || Sbjct 455384 TCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAG 455325 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | ||| ||||| || || |||||||| || ||||| ||||| || || |||||||| Sbjct 455324 GATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| || ||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 145812 GTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGG 145753 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 || ||||| ||||| | ||||| ||| | || || || ||||| ||||| |||||||| Sbjct 145752 TTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGAT 145693 Query 269258 GAAGG 269262 || || Sbjct 145692 GAGGG 145688 Score = 102 bits (112), Expect = 2e-16 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 ||||| || ||||| || || ||||| || || || |||||||| || | | || || Sbjct 454937 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 454878 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 |||||||| || || || || || || ||||| || || ||||| || | ||| ||| | Sbjct 454877 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 454818 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||||||||| || || || || || || || ||||| Sbjct 454817 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269139 TTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGT 269198 |||||||||| || || || ||||| ||||| || || ||||| || | ||||| ||| Sbjct 440965 TTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTCGCGTCCATCTTCTGGC 440906 Query 269199 TGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACG 269258 | ||||| |||| || ||||| || | || ||||||||||| | || | |||| Sbjct 440905 TTAAGAAGCGAGGTCTCATGCCTGGTCTCACCTTCTCTAACGAGCTCATCTCTCGAGACG 440846 Query 269259 AAGGTTTACACTGCGACTTCGCTTGT 269284 | ||| | ||| |||||| || ||| Sbjct 440845 AGGGTCTCCACACCGACTTTGCCTGT 440820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151385152441784