Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq479 226 7e-54
seq1 89.7 1e-12
>seq479
Length=110724
Score = 226 bits (250), Expect = 7e-54
Identities = 638/977 (65%), Gaps = 12/977 (1%)
Strand=Plus/Minus
Query 363592 CCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTT 363651
|| || ||||| || ||||| || | |||||||| || ||||| || |||||||
Sbjct 14901 CCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAGGATGACTCCATTGATGGTATCTAC 14842
Query 363652 GACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATC 363711
|| || || |||| ||||||| || ||||||| ||| || || |||||| | ||
Sbjct 14841 GATACTCTCAAGACCTGTGCTCAGATCTCCAAGACTGCCGGTGGTATTGGTCTTCACATT 14782
Query 363712 CACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTG 363771
|||||| | ||||| || | |||||| ||| || || ||||| || || |
Sbjct 14781 CACAATATCCGTGCGAAGGGCTCCTACATTGCCGGTACCAATGGTTACTCCAACGGCATC 14722
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|||| ||||| || | | ||| || || | ||||| || || ||||| |||
Sbjct 14721 ATTCCTATGCTCCGAGCTTACGACGCCACAGCTCGATACGTTGATCAAGGTGGTAACAAG 14662
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| || || || || || ||||| |||||| || || ||| | ||||| || ||
Sbjct 14661 CGTCCTGGTGCCTTCGCCATCTATCTTGAGCCTTGGCACGCTGATGTATTTGACTTCATT 14602
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||| ||| || || ||||| | || || |||||||| ||||| || ||
Sbjct 14601 GACTTAAGGAAGAACCATGGTAAGGAGGAGGTACGAGCTCGTGATCTTTTCTACGCCCTC 14542
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTG- 364010
||| | || || | ||| |||||||| || || | | | | ||||| |||||| ||
Sbjct 14541 TGGATCTCCGATCTTTTCATGAAGCGTGTCGAATCCGATGGGGATTGG--ACTCTTATGT 14484
Query 364011 --CCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATAC 364068
||| | ||| || || || ||| |||| || | ||||| || | || || ||
Sbjct 14483 GTCCCGC-CGAGTGCCCTGGACTTGCCGACGTTTACGGTGAAGAATTTGAAAAGCTTTAT 14425
Query 364069 GAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTT 364128
|| | || || | |||| | || | || || || || |||||||| |||||
Sbjct 14424 GAGAGTTACGAGAGGCAGGGCAGGGGAAGGAAAACTATCAAAGCCCAGAAGCTTTGGTTC 14365
Query 364129 GCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGC 364188
|||||| | || | || | ||||| || || || || | ||||| ||| | |
Sbjct 14364 GCCATCCTCGAGGCTCAAACCGAGACTGGTGTCCCTTACATCTGCTACAAGGATGCTGCC 14305
Query 364189 AACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAG 364248
||| |||||||||||| ||||||||||||| || | || ||||| ||||| ||
Sbjct 14304 AACTCCAAGTCCAACCAAAAGCACCTTGGTACCATCAAATCCAGTAACCTCTGTACTGAA 14245
Query 364249 ATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTT 364308
|| || || || | |||| || || ||| || ||||| ||||| || | || |||
Sbjct 14244 ATCATGGAGTATTCTTCTCCTGATGAAGTTGCTGTCTGTAATCTTGCTTCTCTTGCTCTT 14185
Query 364309 CCGGCGTTTGTA------AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACC 364362
|| || || ||| || | | | |||| | | | || | || | |||
Sbjct 14184 CCTGCCTTCGTAGACCTTGAACGTCGCGTCTATGACTTCAAAAAGCTGCACGAGATTACC 14125
Query 364363 TATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAA 364422
| || ||| || || |||| || ||| | || || |||||| | |||||
Sbjct 14124 AAGGTTGTTACAAAGAACCTTGACACTGTAATCACCCGTAACTACTATCCAGTGCCTGAG 14065
Query 364423 GCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC 364482
||| || || ||||| ||||| || ||||||||||||| ||||| || || |||
Sbjct 14064 GCCCGCAACTCCAACATGCGCCATCGACCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGAC 14005
Query 364483 GTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAG 364542
| ||| ||| || ||| | || || || |||| ||| | | || |||| ||
Sbjct 14004 GCTTTCATGGCCCTTCGCATGCCGTTCGACTCCGCTGAGGCTAGGGAACTCAATATCCAG 13945
Query 364543 ATCTTTGAAACAATGTA 364559
||||| || || || ||
Sbjct 13944 ATCTTCGAGACGATATA 13928
>seq1
Length=728537
Score = 89.7 bits (98), Expect = 1e-12
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 22513 GTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTaaaaaaaCGTGCA 22572
|| |||||||||||||||||||| | ||| ||||||||| ||| |||| || | |
Sbjct 145797 GTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATCTTCTGGTTAAAGAAGAGAGGG 145738
Query 22573 ATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAGGGTCTTCATAC 22631
| ||||| || || || |||||||| ||||| || ||| | |||||||| | |||||
Sbjct 145737 TTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGCAGGGATGAGGGGATGCATAC 145679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303338604102236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |