Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq1 143 3e-29
seq479 113 6e-20
>seq1
Length=728537
Score = 143 bits (158), Expect = 3e-29
Identities = 184/253 (73%), Gaps = 3/253 (1%)
Strand=Plus/Plus
Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719
||| || || ||| ||| ||||||||||||| | || | ||||| || || |||||
Sbjct 440820 ACAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAG 440879
Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779
|| ||||| || || ||||| |||||||| || |||||||| || || ||||| |||||
Sbjct 440880 ACCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAA 440939
Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATG 32836
|| || || || || ||||| ||||| |||| ||| || ||| | | ||||
Sbjct 440940 GATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAACAAGATTTTTGGTCAGA 440999
Query 32837 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 32896
||||| ||||||| |||||||||||| | |||||| || || || ||||| |
Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGCGTC 441059
Query 32897 AAAGAGATAGTTT 32909
|||||| |||||
Sbjct 441060 AAAGAGGAAGTTT 441072
>seq479
Length=110724
Score = 113 bits (124), Expect = 6e-20
Identities = 487/775 (63%), Gaps = 55/775 (7%)
Strand=Plus/Plus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||| || || || || |||| | | | |||||||| || || | |||||||| | |
Sbjct 14434 TTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGACACATAAGAGT 14493
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110
||| || || || | || || ||||| || ||||| | ||||| || || || ||
Sbjct 14494 CCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAGAGGGCGTAGAA 14553
Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTT-TTAAGATCGAGGAACGCC 63169
| ||||| | | || ||||| || || ||||| ||||| || | ||| |
Sbjct 14554 A-AGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAG-TCAATGAAGTCA 14611
Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229
| | ||||| ||||| || || | || ||||| | | ||||| || ||||| ||
Sbjct 14612 AATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGCTTGTTACCA 14671
Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289
|| ||||| | ||||| ||| ||| | ||| ||| | ||| ||||| || || |||
Sbjct 14672 CCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGCATAGGAATGATGCCGTTG 14731
Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT-TGATAG 63348
|| ||||||||| || | || ||| || | ||||| ||||| ||| ||| ||
Sbjct 14732 GAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATATTGTGAATGTGA-AG 14790
Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408
||| || || || || | || ||||| || || || | ||||| ||||| ||
Sbjct 14791 ACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAGTATCGTAGATACC 14850
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468
|| || |||||| ||||| | || || || ||||||||| | || |||
Sbjct 14851 ATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTTGGGGTCGGGGAGT 14910
Query 63469 TCCCGCATTAAATA---------------------AG----------------------- 63484
|| || || || | ||
Sbjct 14911 ACCGGCGTTGAAAAGCTGTTATACTTGTCAGCAACAGACCTTTCATAATCGGTTGAAAAC 14970
Query 63485 -----GTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAG 63539
||||| ||||| ||||| || | | ||||| | ||||| || ||||| ||
Sbjct 14971 TTACAGTAGGGGAAGCATGAGTGAAATACCTCTCAGACATGAGATTATAGGTCTCGATCA 15030
Query 63540 CTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTC 63599
|| ||| || | | ||| || || || ||||| ||||| | |||||||||||| |
Sbjct 15031 CTTTGTCAATGTTGGAACCATGGATACCAACGGCGACTCGCATGATCATGTGCTGAGGGC 15090
Query 63600 TTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAA 63659
|| || |||||| || || | | | ||| ||| | || | ||| || ||||| |
Sbjct 15091 GCTCGACAATCTTGCCATTAATCCTGAGAAGGTATGATCTCTCAAGAGTCTTGAAACCGA 15150
Query 63660 AATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTT 63714
| |||||||| | |||||||| || || |||||| | |||| ||| |||||||
Sbjct 15151 AGTAGTTGTAGGCAAAGTCTCTGTCATAGATAATAGCAGAGTCGAGAATATCCTT 15205
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633624887480800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |