Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 113 5e-20 >seq1 Length=728537 Score = 113 bits (124), Expect = 5e-20 Identities = 222/324 (69%), Gaps = 12/324 (4%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||||| || | ||| |||||||| || || | ||| || ||| || | | Sbjct 440821 CAGGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGA 440880 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || ||||| ||||| ||||| || || || || ||| |||||| || || Sbjct 440881 CCAGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAG 440940 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT- 93270 ||||| |||||||| ||||| || | | || ||| | ||| | ||| || | Sbjct 440941 ATACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA----CAAGATTTTTGGTC 440996 Query 93271 ---GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC 93327 ||||||| | |||||| ||||| || || |||||||| | || || ||||| Sbjct 440997 AGAGATCCATCGAAGAGCCCAGTCGGCCTTCTTTCGGATACAAGGAATGGTGTCCATAGC 441056 Query 93328 GTTAAATAGGTAATCTCGCTCGTCCGAATCTCGT--ATGTATGTATCGATTAACAGAGAA 93385 || ||| ||| | | ||| ||| | | | || | ||||| || ||||| | ||||| Sbjct 441057 GTCAAAGAGGAAGTTTCG-TCGGGC-AGTGTCCTTAATGTAGGTGTCGATGAGGAGAGAG 441114 Query 93386 TACATTTCAGAATGGACATTCTCC 93409 || | || | |||| |||||| Sbjct 441115 TAGGTCTCGGCGTGGATGTTCTCC 441138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556854549237520