Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq1 134 1e-26
>seq1
Length=728537
Score = 134 bits (148), Expect = 1e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| ||||| || ||||||||||||| ||| | | ||||||| | ||| || ||||
Sbjct 455853 ACGGGTAAGACAATCACTCTTGAAGTCGAATCGAGCGATACCATCGACAATGTCAAGGCC 455912
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || ||||||||||||||||| || || ||||| ||||| || || || ||||| |||
Sbjct 455913 AAGATCCAAGACAAGGAGGGTATCCCCCCTGATCAGCAACGACTCATCTTCGCCGGAAAA 455972
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | || ||| ||| || | ||||||||||| || ||||| || || ||| | |||
Sbjct 455973 CAACTTGAAGATGGCCGAACTCTTTCCGATTACAATATCCAAAAGGAGTCTACCCTCCAT 456032
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || ||||| | || || |||
Sbjct 456033 CTCGTCTTGCGTCTCCGAGGTGGT 456056
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || ||||| | ||||| ||||| | || |||||||| |||| | |
Sbjct 455041 ATGCAAATCTTCGTCAAAACCCTCACCGGCAAAACCATTACCCTTGAAGTCGAAAGCTCT 455100
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| || |||| || || ||||||||||||||||| || || || ||
Sbjct 455101 GATACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCCCCTGACCAG 455160
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || ||||| || || | || || ||| || | |||||||||||
Sbjct 455161 CAGCGATTGATTTTCGCCGGAAAGCAACTTGAAGACGGCCGAACTCTTTCCGATTACAAT 455220
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|||||||| || ||||| | ||| | || ||||| | || || |||
Sbjct 455221 ATTCAAAAGGAGTCCACTCTCCATCTCGTCTTGCGTCTCCGAGGTGGT 455268
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||||| ||||| || || ||||||||||||| || | |
Sbjct 455548 ATGCAGATCTTTGTCAAGACTTTGACCGGAAAGACTATCACTCTTGAAGTCGAGTCGTCT 455607
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| | | || || ||||| |||||||| |||||||| || |||||
Sbjct 455608 GACACTATAGACAACGTTAAGGCGAAGATTCAGGACAAGGAAGGTATTCCTCCTGATCAG 455667
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
||||| | || ||||| || ||||| | |||||| || || | ||||| ||||||
Sbjct 455668 CAACGATTGATTTTTGCTGGTAAACAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 455727
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| ||||| || || ||| | || | ||| | || |||| || |||
Sbjct 455728 ATCCAAAAGGAGTCTACCCTTCACCTTGTTCTCCGTCTGCGTGGTGGT 455775
Score = 114 bits (126), Expect = 1e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || | |||||||| || |||||||||||||||| | ||
Sbjct 454762 ATGCAAATTTTCGTGAAGACCCTCACCGGTAAGACTATCACTCTTGAAGTGGAGTCTTCC 454821
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || ||||||||||||||||| || || || ||
Sbjct 454822 GACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 454881
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
||||| | || ||||| || || ||| | || ||| | | || ||||||| ||||
Sbjct 454882 CAACGATTGATCTTTGCTGGTAAGCAGCTTGAAGATGGCAGGACTCTCTCCGACTACA 454939
Score = 109 bits (120), Expect = 5e-19
Identities = 131/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || |||||| | ||||| || || |||||||||| || ||| || |
Sbjct 455269 ATGCAGATTTTCGTCAAAACTCTTACCGGAAAGACTATCACTCTTGAGGTTGAATCCTCT 455328
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| |||||||||||||| || || || |||
Sbjct 455329 GACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGTATCCCTCCTGACCAA 455388
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
||||| | || || ||||| || || | |||||| || || | || |||||||
Sbjct 455389 CAACGATTGATCTTCGCCGGAAAGCAACTGGAGGATGGTCGAACTTTGTCTGATTACA 455446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419723406339370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |