Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq9 129 1e-24
seq888 107 4e-18
seq301 98.7 2e-15
>seq9
Length=10661
Score = 129 bits (142), Expect = 1e-24
Identities = 238/349 (68%), Gaps = 0/349 (0%)
Strand=Plus/Plus
Query 218507 TCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGC 218566
||||| || | || || || |||||||||| ||||| ||||| | |||| |
Sbjct 7401 TCCCCATCTCCGATTTTGTCAACAAGGAGCTGATTCTCTTCTCCATGGCTGATAATATCC 7460
Query 218567 GTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCG 218626
| || ||||| |||| || || ||||| || ||||| ||| | |||||||
Sbjct 7461 GATCGATTCCATCTGTGGCCGACGGTCTCAAACCTGGTCAGCGAAAGGTTCTCTTTGGTT 7520
Query 218627 CATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686
|||||||| ||||| ||||||| |||||||||||| || | || || || || |
Sbjct 7521 GTTTCAAGCGAAACCTCACCAAAGAAATCAAGGTCGCTCAGCTTGCCGGCTACGTTTCGG 7580
Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746
| | | | || || || ||||| ||| || ||||||| || | ||||
Sbjct 7581 AGAAAACCGCATATCACCATGGTGAAGCCAGTTTGACTTCCACCATTGTCGGTTTAGCAC 7640
Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTC 218806
| ||| || |||||||||||||| || ||||| |||||||| || |||||| |||
Sbjct 7641 AAAACTTCGTCGGCAGTAACAACATCAATCTGCTGGATCCCAACGGCCAATTTGGTACTC 7700
Query 218807 GTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAA 218855
|||| ||||| || || |||||||| | |||||||| |||||
Sbjct 7701 GTCTTGCAGGTGGTAAAGACGCAGCTTCTGCTCGTTATATCTTCACAAA 7749
>seq888
Length=502515
Score = 107 bits (118), Expect = 4e-18
Identities = 121/160 (76%), Gaps = 3/160 (2%)
Strand=Plus/Plus
Query 280177 TTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGG 280236
|||| ||||| ||| | ||||| |||||||| | || |||| ||||| ||||| ||
Sbjct 395533 TTGGTCCCAACGGTTCCGGTAAATCTACCCTTGTTAAGCTCCTCACTGGTGAGACTGAGC 395592
Query 280237 CCA--CTGAGGGGTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGC 280293
||| || | |||| | | |||||||| || ||| || || | ||||||||| || |
Sbjct 395593 CCAACCTTGGCGGTCAGGTCTGGAAGCACCCTAACTTGGTCATTGGTTACGTCGCCCAAC 395652
Query 280294 ACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCC 280333
|||||||||||||||| || |||||||| ||| |||||
Sbjct 395653 ACGCTTTCCACCACATTGACAACCACCTTGACTCTACTCC 395692
Score = 100 bits (110), Expect = 6e-16
Identities = 137/189 (72%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758
|||||||| || || ||||||||||||||||| || || | || || ||||| |
Sbjct 395052 GGTTCTCTTTCTGGCGGTTGGAAGATGAAGCTTGCTCTTGCCCGAGCTATTCTCTTCAAG 395111
Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818
|||||| |||| |||| || ||||| ||||||||| |||| ||||| | ||||
Sbjct 395112 GCCGATATCCTCTTGCTCGACGAGCCTACCAACCACTTGGATGTTCTTAACGTTGACTGG 395171
Query 279819 CTAGTGTCCTACCTAACCAGTCTGA-AGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
|| | ||| || ||| || | ||| | | ||| |||||||||||||||||||
Sbjct 395172 CTGATCAACTATCTCACCTCCCTTACTCGATG-TACCTCCATCATTGTCTCTCACGACTC 395230
Query 279878 TGGCTTCCT 279886
|| ||||||
Sbjct 395231 TGACTTCCT 395239
>seq301
Length=180597
Score = 98.7 bits (108), Expect = 2e-15
Identities = 137/191 (72%), Gaps = 6/191 (3%)
Strand=Plus/Plus
Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229
||| || | |||||||| ||||| ||||| |||||||| ||||| |||| || || |||
Sbjct 159331 GGTATCGTCGGACCCAACGGTGCCGGTAAATCTACCCTCATCAAGCTCCTCACCGGTGAG 159390
Query 280230 ACCCAGGCCACT---GAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|| | | || || || || || ||||| ||| | || | | ||| |||
Sbjct 159391 ACT---GTCCCTCAAGAAGGTTCAGTGCACAAGCACCCCGCTCTTCGTGTCGGTTATGTC 159447
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
|||||||| || |||||||| ||| | | ||| |||||| |||| || || ||||||
Sbjct 159448 GCTCAGCATGCGTTCCACCATATCAACCAGCACTTGGACAAGACTGCTGTGCAGTACATT 159507
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 159508 CAGTGGCGATA 159518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027824974095218
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |