Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-33 seq888 105 1e-17 seq9 105 1e-17 seq512 100 5e-16 >seq1 Length=728537 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || |||||||| ||||| || || |||||||| Sbjct 455267 CCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAA 455208 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | ||||| |||||||| || | || || ||||| || || Sbjct 455207 AGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGG 455148 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| |||||||| |||||||| || | ||| ||| Sbjct 455147 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACT 455088 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| |||||||| || |||||||| |||||||| || ||||| Sbjct 455087 TCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041 Score = 141 bits (156), Expect = 2e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || |||||||| ||||| |||||||| | |||||| || || || || | || ||| ||| Sbjct 454937 TAGTCGGAGAGAGTCCTGCCATCTTCAAGCTGCTTACCAGCAAAGATCAATCGTTGCTGG 454878 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || ||||||||||| ||||| |||||||| ||||||||||| | Sbjct 454877 TCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCGGAA 454818 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| | ||||| || || || ||||||||||| ||||| || ||||| Sbjct 454817 GACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACGAAAATTTGCAT 454762 Score = 141 bits (156), Expect = 2e-28 Identities = 157/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || ||||| || | || || || ||||| |||||||| || |||||||| Sbjct 456055 CCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAA 455996 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || |||||||| ||||||| ||| || || || || Sbjct 455995 AGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGG 455936 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || || ||||||||||| ||||| |||||||| |||||||| || ||| ||||| || Sbjct 455935 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATC-GCTCGATTCGAC 455877 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAG 68440 ||| | ||||| || || ||||| || Sbjct 455876 TTCAAGAGTGATTGTCTTACCCGTAAG 455850 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| ||||||||||| || ||||| Sbjct 455774 CCACCACGCAGACGGAGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 455715 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || || || || | || ||| || || || ||| Sbjct 455714 AGAGTACGACCATCCTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGA 455655 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| ||||| ||| || || ||||| | || || ||| Sbjct 455654 ATACCTTCCTTGTCCTGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACT 455595 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || ||||| || | |||||||| || |||||||| Sbjct 455594 TCAAGAGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548 >seq888 Length=502515 Score = 105 bits (116), Expect = 1e-17 Identities = 443/683 (65%), Gaps = 30/683 (4%) Strand=Plus/Minus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || ||||| | ||||||| ||| || ||| |||||||| ||||| ||||||||| Sbjct 395716 TATCGCCAGAGCATGTACTCAAGGGGAGTAGAGTCAAGGTGGTTGTCAATGTGGTGGAAA 395657 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAG- 225095 || || ||||| ||||| | ||| || ||| || |||||||| | | || | || || Sbjct 395656 GCGTGTTGGGCGACGTAACCAATGACCAAGTTAGGGTGCTTCCAGACCTGACCGCCAAGG 395597 Query 225096 -TCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGG 225154 | || | | ||| || ||||||| ||| | || |||| || || | ||| ||||| Sbjct 395596 TTGGGCTCAGTCTCACCAGTGAGGAGCTTAACAAGGGTAGATTTACCGGAACCGTTGGGA 395537 Query 225155 CCAATCACGCCAATCCGGGATGACATTGCAACCT---GCGAGTTCACGT-----TGCTGA 225206 |||| | | ||| |||||||| | | |||| | ||| | ||| ||||| Sbjct 395536 CCAAGAATGGCAACTCGGGATGAGAGAGACACCTGGAGAGAGATGTCGTAGAGCTGCTG- 395478 Query 225207 AGATCTCAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGGT 225266 ||| || |||| |||| || | ||| |||| ||| | | | | Sbjct 395477 -GATAGAAGAACCAG---GGTACTGGAATGAAACGTTTCGCATCTTGAGCAAAGACTTCT 395422 Query 225267 CCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACT--TGGT-CACCG 225323 |||||| | | ||| || |||| || | || | || ||| | || | | | Sbjct 395421 CCTTGGTCTTCACACCATCAAGGAGGGGAGGGTTAGGAAGCTTGAACTGGTAGTCCTCAG 395362 Query 225324 CGTCCTTCAGGTCGTAGTAAGATGCAGCCTC-GGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || | | || | |||||| || |||||| ||| | || |||||| | ||| Sbjct 395361 CGACATCGAGTTGGTAGTAGGACTTAGCCTCAGGGACATGCTG-GACGAAATCCTCAAGG 395303 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACT 225442 || || ||| | || | | ||||| ||| || ||||| || | || ||| | Sbjct 395302 TTACCAGGGTACCTCTTCAACTTGAAGTTGTT---AAGATGAAGAA-CGTCGGTAACAGT 395247 Query 225443 GC-GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACA-CGTTCGTCAGGCCC 225499 | || ||||||| |||||||||| || ||||||||||| | ||| || || ||| Sbjct 395246 TCGGTTAAGGAAGTCAGAGTCGTGAGAGACAATGATGGAGGTACATCG--AGTAAGGGAG 395189 Query 225500 TTGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCC 225559 |||| | |||| ||||| | ||||| || |||| |||||| ||||| ||||| Sbjct 395188 GTGAGATAGTTGATCAGCCAGTCAACGTTAAGAACATCCAAGTGGTTGGTAGGCTCGTCG 395129 Query 225560 AGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAG 225619 || | ||||| || || | | ||| || || || | |||| |||||||| ||||| Sbjct 395128 AGCAAGAGGATATCGGCCTTGAAGAGAATAGCTCGGGCAAGAGCAAGCTTCATCTTCCAA 395069 Query 225620 CCCCCGGACAGGGAGCCGATTGA 225642 || || || || || || || || Sbjct 395068 CCGCCAGAAAGAGAACCAATGGA 395046 >seq9 Length=10661 Score = 105 bits (116), Expect = 1e-17 Identities = 267/401 (67%), Gaps = 10/401 (2%) Strand=Plus/Minus Query 176132 GGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCGAGGTAGTTCAGCAG 176191 |||||| | | || || |||||||| || || || || | | |||||| |||| Sbjct 7855 GGTGGGCATGAAATAATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAA 7796 Query 176192 ACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGACAGTTGTGTGAAGATATA 176251 | || || || |||||| || | || || | | | || | |||||||||||| Sbjct 7795 CCCGTCATCTGCAGGGTGGAAGATTGCTCGAGTCATCCGTGGAAGGTTTGTGAAGATATA 7736 Query 176252 CCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAG 176311 | |||||| || ||| || || || ||| || | ||| ||||| ||| ||| Sbjct 7735 ACGAGCAGAAGCTGCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATC 7676 Query 176312 AAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTG 176371 |||| ||||||||| || || ||| ||| ||| || | ||||| |||| | | Sbjct 7675 CAGCAGATTGATGTTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTG----G 7620 Query 176372 GAG--AGAC--GCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACT 176427 || | || || || || |||||||| ||| ||||| ||| ||||||| || Sbjct 7619 AAGTCAAACTGGCTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCT 7560 Query 176428 GCGCGACTTTGATTTCTTGTACGAGGTTGCGCTT-CAACGCCGAGAACAGAATCTTCCGC 176486 | ||||| |||||||||| |||||| ||||| ||| | | || |||| ||| ||| Sbjct 7559 GAGCGACCTTGATTTCTTTGGTGAGGTTTCGCTTGAAACAACCA-AAGAGAACCTTTCGC 7501 Query 176487 TGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACG 176527 || || || ||||| ||| | || || ||||| || || Sbjct 7500 TGACCAGGTTTGAGACCGTCGGCCACAGATGGAATCGATCG 7460 >seq512 Length=93957 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 68286 TAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGG 68345 || || || || ||||| || || || | |||||| |||||||| || | || || ||| Sbjct 79123 TAGTCAGAAAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGG 79182 Query 68346 TCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT 68405 || || || || || |||||||| || ||||| | |||||| ||||||||||| | Sbjct 79183 TCAGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGAG 79242 Query 68406 GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440 || || || || | ||||||||| ||||| || || Sbjct 79243 GACTCGACCTCGAGGGTGATGGTCTTTCCGGTAAG 79277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921612054788560