Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq479 170 4e-37 seq1 136 7e-27 >seq479 Length=110724 Score = 170 bits (188), Expect = 4e-37 Identities = 438/664 (66%), Gaps = 10/664 (2%) Strand=Plus/Plus Query 244733 ATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCG 244792 || || || |||||||||||| | |||||||| || ||||||| || |||||||||| | Sbjct 14243 ATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTTGGAG 14302 Query 244793 TTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852 ||| || ||||||||| ||| | || | || |||||| || || |||||| | Sbjct 14303 TTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAGGATG 14362 Query 244853 CTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGG 244912 | ||| || | | || |||| || | | || |||||| |||||| | Sbjct 14363 GCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTCTCGTAACTC 14422 Query 244913 GTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG 244972 || || || || || || | || ||| | || || |||||| || || Sbjct 14423 TCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCGGCGGGA 14482 Query 244973 CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAG 245032 ||||| ||| |||| || || || | ||| | || |||||| || |||| ||||||| Sbjct 14483 CACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAGATCCAG 14542 Query 245033 AGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCC 245092 ||||| | ||| || || | | | ||| ||| ||| ||||||||| | || Sbjct 14543 AGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTTAAGTCA 14602 Query 245093 AAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGC 245152 | |||||||| || || ||||||| ||||| | |||| |||| ||| || || ||| Sbjct 14603 ATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACCAGGACGC 14662 Query 245153 TTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTG-AAGATGCGCAGGGTAG 245207 ||||| || || || | || | | |||||| |||| | ||| | || || ||| Sbjct 14663 TTGTTACCACCTTG----ATCAACGTATCGAGCTGTGGCGTCGTAAGCT-CGGAGCATAG 14717 Query 245208 GCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGT 245267 | | |||||||| |||| || ||||| || ||||||| |||||| | | || | Sbjct 14718 GAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGGATAT 14777 Query 245268 TGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGG 245327 || ||| | || | || ||||| ||||||||| | || ||| |||||| | Sbjct 14778 TGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCTTGAGAG 14837 Query 245328 TGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCT 245387 | || || || || ||| ||| ||||||| | || ||||| || |||| | Sbjct 14838 TATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGACATTT 14897 Query 245388 GGGG 245391 |||| Sbjct 14898 GGGG 14901 >seq1 Length=728537 Score = 136 bits (150), Expect = 7e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 ||||||||| | || | || ||| | ||||| ||||| ||||||||||| || | ||| Sbjct 440981 TTCGGCGAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTCTGGTTCTTTC 440922 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 || |||||||||||||| ||| || |||| || ||||| || ||||||||||| ||||| Sbjct 440921 GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTC-ATGCCTGGTCTCACCTTCTCTAACGA 440863 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 |||||| | |||||||| || || | ||||||||||| ||||| ||| Sbjct 440862 GCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGCCTGTCTCCTCTTC 440811 Score = 89.7 bits (98), Expect = 1e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 42702 AGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATC 42761 || ||||| || ||| | ||| || ||||| ||||| || || | || || | ||| Sbjct 145818 AGACTGGTGGCTTTTGCATGCGTGGAAGGCATTTTCTTTTCTGGGTCTTTTGCTGCAATC 145759 Query 42762 TTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGC 42821 |||||| | ||| ||| | || |||||| ||||| || || || ||||| | |||||| Sbjct 145758 TTCTGGTTAAAGAAGAGAGGGTTGATGCCTGGACTGACATTTTCAAACGAGTTGATCAGC 145699 Query 42822 AGGGACGAGGGGCTGCATA 42840 ||||| |||||| |||||| Sbjct 145698 AGGGATGAGGGGATGCATA 145680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328599792480