Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 4e-20
>seq1
Length=728537
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || |||||||| ||||| ||||||
Sbjct 455270 ATACCACCTCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCG 455211
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| || || | ||| ||||| ||| | |||||||| |||||||| ||
Sbjct 455210 GAAAGAGTTCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGG 455151
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || ||||| || || |||| || | ||| || || |||
Sbjct 455150 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCG 455091
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || |||| ||||||||||| || ||||| || || ||||||||
Sbjct 455090 ACTTCAAGGGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTGCAT 455041
Score = 105 bits (116), Expect = 6e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||||||||| || || ||| | || | ||| ||
Sbjct 455756 ACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCA 455697
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| |||||| || || | |||||||||||||| || || ||||| ||||| || || |||
Sbjct 455696 AGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCCTGA 455637
Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310
| | || | | | || | |||| ||||| || ||||||||||| ||||| | || ||
Sbjct 455636 A-TCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTCTT 455578
Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| | ||| || ||||| || |||||
Sbjct 455577 TCCGGTCAAAGTCTTGACAAAGATCTGCAT 455548
Score = 93.3 bits (102), Expect = 4e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||||||||||||||| || || || || || || ||||| || || ||||
Sbjct 454892 ATCAATCGTTGCTGGTCAGGAGGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTG 454833
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|| | ||||||||||||||| ||||| ||||| | || || ||||| || || || ||
Sbjct 454832 TCGATGGTGTCGGAAGACTCCACTTCAAGAGTGATAGTCTTACCGGTGAGGGTCTTCACG 454773
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 454772 AAAATTTGCAT 454762
Score = 93.3 bits (102), Expect = 4e-14
Identities = 114/156 (73%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244
||| |||| ||| ||||| ||| | ||||||||||| ||||| || || || || || ||
Sbjct 455424 ATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTTGGTCAGGAGGGATACCCTCCTT 455365
Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304
|| ||||| || |||| || | |||||| || || || || || ||||| |
Sbjct 455364 GTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAGAGGATTCAACCTCAAGAGTGAT 455305
Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| |||||||| || ||||| |||||
Sbjct 455304 AGTCTTTCCGGTAAGAGTTTTGACGAAAATCTGCAT 455269
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | ||| || ||||| || || || |||||||||||||| ||||||
Sbjct 456058 ATACCACCTCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCG 455999
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | ||||||||| ||| | || | ||||||||| || ||
Sbjct 455998 GAAAGAGTTCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGG 455939
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| || || || || ||||| || || |||| || | ||| ||| || |||
Sbjct 455938 GGGATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCG 455879
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320
||||| ||||| | || || || || |||
Sbjct 455878 ACTTCAAGAGTGATTGTCTTACCCGTAAGA 455849
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451998126264080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |