Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 6e-17
>seq1
Length=728537
Score = 104 bits (114), Expect = 6e-17
Identities = 144/202 (71%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || ||| || ||||| || ||||||||||||| ||||| || | | |||
Sbjct 456050 TCGGAGACGCAAGACGAGATGGAGGGTAGACTCCTTTTGGATATTGTAATCGGAAAGAGT 455991
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| |||||||| || || ||||||||||||||||| || ||||| || || || ||
Sbjct 455990 TCGGCCATCTTCAAGTTGTTTTCCGGCGAAGATGAGTCGTTGCTGATCAGGGGGGATACC 455931
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || ||||| ||| || |||| ||| || | | ||| || || |
Sbjct 455930 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTCGATTCGACTTCAAG 455871
Query 199588 CGTGATCGTCTTACCCGTGAGA 199609
||||| ||||||||||| |||
Sbjct 455870 AGTGATTGTCTTACCCGTAAGA 455849
Score = 100 bits (110), Expect = 7e-16
Identities = 127/175 (73%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 199452 TGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCT 199511
|||| |||| |||||| | ||||| ||||| ||||||||||||||||| | || || |
Sbjct 455446 TGTAATCAGACAAAGTTCGACCATCCTCCAGTTGCTTTCCGGCGAAGATCAATCGTTGTT 455387
Query 199512 GGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTG 199571
|||| ||| || || || ||||||||||| ||| || || | |||||| |
Sbjct 455386 GGTCAGGAGGGATACCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCAG 455327
Query 199572 TTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||| || || | ||||| ||||| || || |||||||| || ||||| ||
Sbjct 455326 AGGATTCAACCTCAAGAGTGATAGTCTTTCCGGTAAGAGTTTTGACGAAAATCTG 455272
Score = 98.7 bits (108), Expect = 2e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| || | || ||| || |||||||| ||||||||||| | ||||| || | | |||
Sbjct 455262 TCGGAGACGCAAGACGAGATGGAGAGTGGACTCCTTTTGAATATTGTAATCGGAAAGAGT 455203
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || ||||| || |||||||||||||| || | ||||||||||| || || ||
Sbjct 455202 TCGGCCGTCTTCAAGTTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCAGGGGGGATACC 455143
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| || || ||||| ||| || |||| ||| || | |||| || || |
Sbjct 455142 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACTTCAAG 455083
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || || || ||||| ||||| || || |||||
Sbjct 455082 GGTAATGGTTTTGCCGGTGAGGGTTTTGACGAAGATTTG 455044
Score = 98.7 bits (108), Expect = 2e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|| |||||||| || || ||||||||||||| ||||||||| | | ||| | |||||
Sbjct 455759 AGAACAAGGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCC 455700
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
|| || || || || || || || | || ||||| || ||| ||| ||||| |||
Sbjct 455699 TCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCAGGAGGAATACCTTCCTTGTCC 455640
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597
|||||||| ||| ||| || | ||||| | | || || || | ||||| |||
Sbjct 455639 TGAATCTTCGCCTTAACGTTGTCTATAGTGTCAGACGACTCGACTTCAAGAGTGATAGTC 455580
Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|| || || | ||| || ||||| || ||
Sbjct 455579 TTTCCGGTCAAAGTCTTGACAAAGATCTG 455551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178908035770166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |