Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq216 154 2e-32
seq479 134 2e-26
seq157 123 3e-23
seq445 89.7 7e-13
seq590 86.0 8e-12
seq9 84.2 3e-11
>seq216
Length=1024
Score = 154 bits (170), Expect = 2e-32
Identities = 203/279 (73%), Gaps = 2/279 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|| || || |||||||| | ||| || || || ||||| || ||||| || ||||||||
Sbjct 326 TCAAAGTCCTCACCACCAAGGTGAGTGTCACCAGCGGTAGCCTTGACCTCGAAGATACCC 267
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | || | || ||||| || ||||||||||| ||||| || || | |||
Sbjct 266 TCCTCAATAGTCAAAAGAGAGACATCGAAAGTACCACCACCAAGGTCGAAGATCAAAACG 207
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||| | ||| | || ||||| || |||||||| |||||||| || || || || ||
Sbjct 206 TTCTTCTCGCCCTCAGACTTCTTGTCAAGACCGTAAGCGATAGCAGCGGCAGTAGGCTCG 147
Query 7637 TTAATAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| || |||| || |||| | || || ||||| | | || || || || || || ||
Sbjct 146 TTGATGATACGGAGGACA-TCGAGACCGGCAATGGCACCAGCGTCCTTGGTAGCCTGACG 88
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734
||| || ||||| |||||||| ||||| || || || ||
Sbjct 87 TTGAGAGTCGTTGAAGTAGGCGGGGACGGTGACAACGGC 49
>seq479
Length=110724
Score = 134 bits (148), Expect = 2e-26
Identities = 704/1115 (63%), Gaps = 23/1115 (2%)
Strand=Plus/Plus
Query 104870 CCCACATATCGAATTGAAGAATACCTTTACTAAACGGTGACCCCTTAAACGTTTCATAAG 104929
||||||| ||| | ||||| ||||| ||| | || || || | | | |||||| |
Sbjct 13821 CCCACATGTCGTACTGAAGGATACCCTTAGAGATGGGAGAACCTTCGTAAGATTCATAGG 13880
Query 104930 GACCGTACATTTCGGCAAGTTCACACGACGATTCGAGTGATGCGTGGTAGATAGTTTCGA 104989
||| || ||||||||||| || |||| || || | |||||||| || || ||||
Sbjct 13881 TACCAAACTCCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGA 13940
Query 104990 ATATATCAATGTTGAGTTTTCTCGATTCTTCTGAACCGAATGTCATTCTTAACATGATAA 105049
| || | || ||||||| || | || | || |||| | ||| | | || |
Sbjct 13941 AGATCTGGATATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGA 14000
Query 105050 ACACGTCAGCGAGACCCTGAACACCAATACCGATGGGTCTGTGACGCATATTTGAACGTT 105109
| |||| || |||||||| ||||||| ||| | |||| || ||||| || || |||
Sbjct 14001 AAGCGTCGGCAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGA--GTT 14058
Query 105110 TCCCGTTTTCGGT--TGGGTAAAAGTTTTTATCAATAACCTTGTTTAAGTTACGTGTAAC 105167
| | | || ||| || |||| || || ||| | ||| ||||||
Sbjct 14059 GCGGGCCTCAGGCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAAC 14118
Query 105168 CATTTTCGTAA-CACGATGTAACTCTTCATGGT--TAAACTCGTTCTTCTCGACATCAAC 105224
| || |||| | || || | || || || || || || ||| | || ||
Sbjct 14119 AACCTTGGTAATCTCG-TGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGG--TCTAC 14175
Query 105225 GTATTTTGGTAACGCGATTGATGCGAGATTACATACGGCGGTTTCTTCCTTATCCGTAAA 105284
| | || | || | || || |||||||| || || ||| || | | | |
Sbjct 14176 GAAGGCAGGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATA 14235
Query 105285 CTCCAGAATTTCTGTACACAAATTTGATGATTTAATCGTACCAACGTGTTTATGGTTCGA 105344
||||| ||||| ||||| | || ||||| || ||||||| ||| || ||||| ||
Sbjct 14236 CTCCATGATTTCAGTACAGAGGTTACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGA 14295
Query 105345 CTTTTCATTACACGCGTCTTTGTAAAGCATATATGGGGTTCCCGTTTCACTTTGGGATTT 105404
||| || || || ||||| || || ||| || || || |||| | |
Sbjct 14296 CTTGGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTC 14355
Query 105405 AATAATTGCTTTCCAAATCTCCGAAGCTGGTACAACTTTAGTTGCGATACCTTCAGATTC 105464
| || || ||||| || | ||| | | ||| || | | || | ||
Sbjct 14356 GAGGATGGCGAACCAAAGCTTCTGGGCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTCTC 14415
Query 105465 GTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTG 105524
||| |||| ||||| | |||||| |||| |||||| ||||| | ||| || ||
Sbjct 14416 GTAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTC 14475
Query 105525 ATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGG 105584
| ||||| | | | ||||| ||||||||||| || || |||||||| | ||| |
Sbjct 14476 GGCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGA 14535
Query 105585 AATCCACATGGCTGAAAAGAGGTCTCGACACCTCG--CCTCTTCATCACCTTGATTCAAA 105642
||||| | ||| | || || || ||| |||| |||| || | ||| || |||
Sbjct 14536 GATCCAGAGGGCGTAGAAAAGATCACGAG--CTCGTACCTCCTCCTTACCATGGTTCTTC 14593
Query 105643 CGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGAC 105702
| | || | || || | | ||| |||||||| || || | ||||| || | |
Sbjct 14594 CTTAAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCA 14653
Query 105703 CCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGT 105756
|| | ||||| || |||||| || |||| || || | || || ||||
Sbjct 14654 CC---AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGG 14710
Query 105757 AACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCA 105816
| ||| ||||| || || | ||| ||||| || || ||| | || || |||
Sbjct 14711 AGCATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCA 14770
Query 105817 CGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCT 105876
|| | || ||||| ||| | |||||||| || || ||| ||| | |||||
Sbjct 14771 CGGATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTC 14830
Query 105877 TTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGAT 105936
|| | |||||||| ||||| || || || ||||| | || | ||||| || |||
Sbjct 14831 TTGAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGAT 14890
Query 105937 GACATTTGTGGTCTGGGTGTACCAGCATTGAACAG 105971
|||||||| |||| ||| ||||| || ||||| ||
Sbjct 14891 GACATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925
>seq157
Length=258474
Score = 123 bits (136), Expect = 3e-23
Identities = 267/395 (68%), Gaps = 6/395 (2%)
Strand=Plus/Minus
Query 7331 GAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGG 7390
||||| | |||||||| || |||||||| || | || || || || | ||||| | |
Sbjct 253372 GAAGAGAGAGTTCGCTTAGCACGCTCACAAGCAGATCTCAATCGTCGCAAAGCACGGGCG 253313
Query 7391 TTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGT 7450
| | || || || ||| || | || ||||| | |||||| ||||||
Sbjct 253312 TCGTCAGAGATGTCAAGCTTGGTCTTCCTCTTGAACTCAGCCTTGAAGTGCTCAAGGAGG 253253
Query 7451 CTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAG 7510
| ||||| || |||||||| | || || || || || || || ||||| |||
Sbjct 253252 TTGTTGTCGAAGTCCTCACCACCAAGATGAGTGTCACCAGCAGTGGCCTTGACAGAGAAG 253193
Query 7511 ATACCT--CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAA 7568
| ||| || | |||| | | | || ||||| || ||||||||||||| ||| || |
Sbjct 253192 A--CCTTGCCCTGAATGGTAAGAAGAGAGACATCGAAAGTACCACCACCCAAGTCGAAGA 253135
Query 7569 TGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCG 7628
|||| ||||| || || || | |||| || |||||||| || ||||| || || |
Sbjct 253134 TGAGGACGTTTCGCTCCTCCTCAGTCTTCTCGTCAAGACCGTAGGCAATAGCGGCAGCAG 253075
Query 7629 TTGGTTCATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTC 7687
| ||||| || |||||||| || || || || || ||||| | | || || || ||
Sbjct 253074 TAGGTTCGTTGATAATACGGAG-CACCTCAAGACCGGCAATGGCACCGGCGTCCTTAGTG 253016
Query 7688 GCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGAC 7722
|| | || || || ||||| |||||||| || ||
Sbjct 253015 GCGAGACGCTGAGAGTCGTTGAAGTAGGCAGGAAC 252981
>seq445
Length=579832
Score = 89.7 bits (98), Expect = 7e-13
Identities = 140/200 (70%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936
|| ||||| | | ||| | ||||| ||| | || |||| ||| ||||||||
Sbjct 200 ATGACCTTGAAAGGCCAGTGCTTCATGTCGGCCTGAACCTCAGCATCCTCAAACTTTCGG 259
Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996
|| || | ||||| || || ||||| ||||| | ||||||||||| ||||||||
Sbjct 260 CCAATCAATCGCTTGGCGTCGAAAACAGTGTTGTAAGGGTTCATGGCGACCTGGTTCTTG 319
Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056
|| ||||| ||||| | || || | || | || |||||||| || || || |||
Sbjct 320 GCAGCGTCACCGATCAATCGCTC---AGAGTCGTTGAAAGCGACGTAAGAGGGAGTGGTT 376
Query 8057 CGATTCCCTTGGTCGTTCGC 8076
|| || || |||||||||||
Sbjct 377 CGGTTACCCTGGTCGTTCGC 396
>seq590
Length=83274
Score = 86.0 bits (94), Expect = 8e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 8076 CAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAAT 8135
||||||||||||| |||||||||||||||||| | || || ||||| || || || || |
Sbjct 82819 CAATAATTTCTACCCGGTCGTTTTGCCAGACGGCAACACAAGAATAGGTAGTGCCCAAGT 82760
Query 8136 CAATACCGATTGCTTGAGTCATTTT 8160
| |||||||| |||| ||||| ||
Sbjct 82759 CGATACCGATAGCTTTTGTCATGTT 82735
>seq9
Length=10661
Score = 84.2 bits (92), Expect = 3e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 183338 GCGTCTTTACCACCCATGAGACGTGTACCAAATTGACCACATGGTTCGAGTAAATTAATA 183397
|||||||||||||| ||||| ||||||||||| || || || || | ||| ||
Sbjct 7722 GCGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATG 7663
Query 183398 TTATTCGACCCCGTAAAATTATGTGCTAATTTTACAATTGTATCTGCCAAAGAGACTTCA 183457
|| || || || || |||||||| ||||| || | |||| | |||||
Sbjct 7662 TTGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCA 7603
Query 183458 CCGTGGTGATACGATGTTTTTTCCGAAACGTATGCGGCTAATTGCGCAACCTTCATTTC 183516
|| |||||||| | ||||| ||||||||||| |||| | || || ||||| |||||
Sbjct 7602 CCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGATTTC 7544
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635125670634320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |