Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200 45.1_202017-07-17] 898 sequences; 18,619,184 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq479 178 2e-39 seq1 161 1e-34 seq9 102 1e-16 >seq479 Length=110724 Score = 178 bits (196), Expect = 2e-39 Identities = 722/1121 (64%), Gaps = 35/1121 (3%) Strand=Plus/Minus Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAG 111785 || |||||||| ||||| || ||||||||||||| || ||||| | || | ||| Sbjct 14925 CTTTTCAACGCCGGTACTCCCCGACCCCAAATGTCATCATGCTTCCTCGTGGCCATGAAG 14866 Query 111786 GAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGG 111845 || || || || |||| || |||| ||||||| ||||| || ||||| ||| Sbjct 14865 GATGACTCCATTGATGGTATCTACGATACTCTCAAGACCTGTGCTCAGATCTCCAAGACT 14806 Query 111846 GCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 || |||||||| || | ||||| || || || | || || | ||| || || | Sbjct 14805 GCCGGTGGTATTGGTCTTCACATTCACAATATCCGTGCGAAG--GGCTCCTACATTGCCG 14748 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| |||||| | || | || || ||||| ||||| || | | |||||||||| | Sbjct 14747 GTACCAATGGTTACTCCAACGGCATCATTCCTATGCTCCGAGCTTACGACGCCACAGCTC 14688 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017 | || || | |||| ||| | |||| | || |||| |||||||||||| Sbjct 14687 GATACGTTGATCAAGGTGG---TAACAAGCGTCCTGGTGCCTTCGCCATCTATCTTGAGC 14631 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| | | || ||| |||| || | ||||| ||| | ||||||| Sbjct 14630 CTTGGCACGCTGATGTATTTGACTTCATTGACTTAAGGAAGAACCATGGTAAGGAGGAGG 14571 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || || ||||| |||| ||| |||||||| | ||||| ||||||||| | || | Sbjct 14570 TACGAGCTCGTGATCTTTTCTACGCCCTCTGGATCTCCGATCTTTTCATGAAGCGTGTCG 14511 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 | ||| ||||| |||| | ||||| | | || || || || |||| | Sbjct 14510 AATCCGATGGGGATTGGACTCTTATGTGTCCCGCCGAGTGCCCTGGACTTGCCGACGTTT 14451 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTG-CG 112256 ||||| || |||||| || || | ||||| || | | | | || || | Sbjct 14450 ACGGTGAAGAATTTGAAAAGCTTTATGAGAGTTACGA-GAGGCAGGGCAGGGGAAGGAAA 14392 Query 112257 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 112315 || | ||| | || | | ||| || || ||| || ||||||||||||||||| Sbjct 14391 ACTATCAAAGC-CCAGAAGCTTTGGTTCGCCATCCTCGAGGCTCAAACCGAGACTGGTGT 14333 Query 112316 ACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 112375 || || || ||||| || || ||| ||| || |||||| | | ||| Sbjct 14332 CCCTTACATCTGCTACAAGGATGCTGCCAACTCCAAGTCCAACCAAAAGCACCTTGGTAC 14273 Query 112376 GATCAA---GAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGAC 112432 ||||| ||| ||||||||||| |||||| |||| | | | ||||| Sbjct 14272 CATCAAATCCAGT---AACCTCTGTACTGAAATCATGGAGTATTCTTCTCCTGATGAAGT 14216 Query 112433 GGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG-A 112491 ||||| ||||| || || || | ||||| || | || || | || || | Sbjct 14215 TGCTGTCTGTAATCTTGCTTCTCTTGCTCTTCCTGCCTTCGTAGACCTTGA-ACGTCGCG 14157 Query 112492 CATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAG 112551 | ||| | |||| || ||||| |||| || ||| ||||| ||||| ||| | Sbjct 14156 TCTATGACTTCAAAAAGCTGCACGAGATTACCAAGGTTGTTACAAAGAACCTTGACACTG 14097 Query 112552 TTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACC 112608 | || | || | || || || |||| || || || || || ||| | || | Sbjct 14096 TAATCACCCGTAACTACTATCCAGTGCCTGAG---GCCCGCAACTCCAACATGCGCCATC 14040 Query 112609 GTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCAT 112668 | || ||||||| |||||||| ||||| || || | ||||| |||| | | Sbjct 14039 GACCTGTTGGTCTTGGTGTCCAGGGTCTTGCCGACGCTTTCATGGCCCTTCGCATGCCGT 13980 Query 112669 TTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCG 112728 | || |||| || || | |||| ||||| | || || ||||| || || ||||| | Sbjct 13979 TCGACTCCGCTGAGGCTAGGGAACTCAATATCCAGATCTTCGAGACGATATACCACGCGG 13920 Query 112729 CTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTT 112788 | ||||||||| | || | || |||| |||| | |||||| | | || |||| Sbjct 13919 CGCTTGAGGCGTCATGCGAACTTGCCGAGGAGTTTGGTACCTATGAATCTTACGAAGGTT 13860 Query 112789 CTCCAGCTTCAC-AAGGG-GTGCTTCAATTTGATATGTGGG 112827 |||| | || | ||||| | ||||| | || ||||||| Sbjct 13859 CTCC--CATCTCTAAGGGTATCCTTCAGTACGACATGTGGG 13821 >seq1 Length=728537 Score = 161 bits (178), Expect = 1e-34 Identities = 214/289 (74%), Gaps = 10/289 (3%) Strand=Plus/Minus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGC-TCTTTGAAGCCATCCA 102106 ||||| |||| || |||||||| ||| || ||| | | ||||||| || || | Sbjct 441107 CTCATCGACACCTACATTAAGGACACTGCCC-GACGAAACTTCCTCTTTGACGCTATGGA 441049 Query 102107 AACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAA 102163 || |||| ||||| | |||||| || || |||||| | ||| | ||| ||| Sbjct 441048 CACCATTCCTTGTATCCGAAAGAAGGCCGACTGGGCTCTTCGATGGATCTCTGACCAAAA 440989 Query 102164 GTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTC 102223 || ||| | || ||||||||| | || ||||| || ||||||||||||||||| Sbjct 440988 ATCTTGTTTCG--GC-GAGCGACTCATTGCTTTTGCTGCCGTGGAGGGTATCTTCTTCTC 440932 Query 102224 TGGTTCCTTCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCT 102282 |||||| ||| ||| | || | ||||| |||||||||||||||||||| |||||| || Sbjct 440931 TGGTTCTTTC-GCGTCCATCTTCTGGCTTAAGAAGCGAGGTCTCATGCCTGGTCTCACCT 440873 Query 102283 TCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| |||||||| |||||||| |||||||| |||||| || ||||| Sbjct 440872 TCTCTAACGAGCTCATCTCTCGAGACGAGGGTCTCCACACCGACTTTGC 440824 >seq9 Length=10661 Score = 102 bits (112), Expect = 1e-16 Identities = 282/427 (66%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 175840 ACCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAA 175899 ||| ||||||||||| |||| ||| || | | ||||| || | || |||||| | | Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841 Query 175900 GTCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTCTCGG 175959 ||||| |||||| | |||||| || |||| |||||||| | |||||| || Sbjct 7840 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 7781 Query 175960 ATCAAAGATCTTTCG-GGCATCTTTTGTGAGCTTTGTAAAGATATACCTCGTTTGAGACG 176018 | ||||| ||| | |||| || || ||||| |||||||| | | || | Sbjct 7780 GTGGAAGATTGCTCGAGTCATC-CGTGGAAGGTTTGTGAAGATATAACGAGCAGAAGCTG 7722 Query 176019 CATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATAT 176078 | || |||||||| ||||| |||||||| || || || || || |||||||| | Sbjct 7721 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 7662 Query 176079 TGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGACTTCAC 176138 |||| || | | ||| | || || |||||| ||| | | | | |||||| Sbjct 7661 TGTTACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGTGGAAGTCAAACTGGCTTCAC 7602 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAA-CTGCGCCACTTTCATCTCA 176197 | ||||| || || | ||||| | || | |||| ||| ||| || || || || || Sbjct 7601 CATGGTGATATGCGGTTTTCTCCGAAACGTA-GCCGGCAAGCTGAGCGACCTTGATTTCT 7543 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 | |||| || | |||||| | | | |||||| || || ||| |||||||| Sbjct 7542 TTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGAGACCG 7483 Query 176258 TCCGCCA 176264 || |||| Sbjct 7482 TCGGCCA 7476 Score = 82.4 bits (90), Expect = 9e-11 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 176921 AGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACCGCGAGCGTT 176980 |||||||| || || || | ||| || || || || | ||||| | ||| ||||| | | Sbjct 6719 AGAGGGAAAACGCCATACTCATCACGTCCGACAACTGCAAGACCAGAAACGGCGAGAGCT 6660 Query 176981 TTCGCAGAATCACCCTCTGTCACGATGAGTGTACA---CTTGCCAGATTGTGCCGTACCC 177037 || |||||||| || || |||| |||||| || || |||| || || |||| || Sbjct 6659 TTGGCAGAATCTCCTTCCGTCAGGATGAGAGTGCAGTTCTTGG-AGTTTCGGCCG--CCA 6603 Query 177038 GCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTG 177079 || ||||||||||| || | || |||||||| |||| || Sbjct 6602 GCATTGTTCGCATCTTCAAGCTTTACAATACCAGAAATTCTG 6561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735432166560