Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cryptococcus_20neoformans_20var._20grubii_20[genbank_20GCA_5F0022200
45.1_202017-07-17] 898 sequences; 18,619,184 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq479 183 4e-41
seq9 100 3e-16
seq1 93.3 5e-14
>seq479
Length=110724
Score = 183 bits (202), Expect = 4e-41
Identities = 680/1053 (65%), Gaps = 37/1053 (4%)
Strand=Plus/Plus
Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047
||||||| | ||| |||| ||||| || ||||| || || || ||||| || || ||
Sbjct 13890 CCTCGGCAAGTTCGCATGACGCCTCAAGCGCCGCGTGGTATATCGTCTCGAAGATCTGGA 13949
Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107
||| | | || ||| | ||||||| || | | | || || | || |
Sbjct 13950 TATTGAGTTCCCTAGCCTCAGCGGAGTCGAACGGCATGCGAAGGGCCATGAAAGCGTCGG 14009
Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167
| |||||||| ||||| ||||||| || ||||| |||||| ||| || ||
Sbjct 14010 CAAGACCCTGGACACCAAGACCAACAGGTCGATGGCGCATGTTGGAGTTGCGGGCCTCAG 14069
Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227
|| || || |||| ||| ||| || | || ||||| || ||| ||| || |
Sbjct 14070 GCACTGGATAGTAGTTACGGGTGATTACAGTGTCAAGGTTCTTTGTAACAACCTTGGTAA 14129
Query 110228 TTTCATGGAG---TTTGTCGTAATCGA----ACGTTTTCG-TCTCCTTATTGACATATTT 110279
| || || || |||| || || || ||||| | ||| | | | ||
Sbjct 14130 TCTCGTGCAGCTTTTTGAAGTCATAGACGCGACGTTCAAGGTCTACGAA--GGCA----- 14182
Query 110280 GGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAA 110339
|| ||||||| ||| |||||||| || |||| | || || | || ||||
Sbjct 14183 -GGAAGAGCAAGAGAAGCAAGATTACAGACAGCAACTTCATCAGGAGAAGAATACTCCAT 14241
Query 110340 AATTTCCGTACACAAGTTGGAACTC---TTAATGACACCCAAGTTCTTCTGATTCGATTT 110396
||||| ||||| | ||| ||| || ||| ||| | || ||| || || || ||
Sbjct 14242 GATTTCAGTACAGAGGTT---ACTGGATTTGATGGTACCAAGGTGCTTTTGGTTGGACTT 14298
Query 110397 GGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAG 110456
||||||| |||||||| ||| ||||| ||| |||||| || || || | || |||
Sbjct 14299 GGAGTTGGCAGCATCCTTGTAGCAGATGTAAGGGACACCAGTCTCGGTTTGAGCCTCGAG 14358
Query 110457 AATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTG-CGTTAGCGAGACCTTCCTCCTCG 110514
||||| ||| | | || | ||| || |||| | || | | ||| |||| |||
Sbjct 14359 GATGGCGAACCAAAGCTTCTG-GGCTTTGATAGTTTTCCTTCCCCTGCCCTGCCTC-TCG 14416
Query 110515 TACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTG 110574
|| | || | | |||||||| | ||||| || || | ||| || || |
Sbjct 14417 TAACTCTCATAAAGCTTTTCAAATTCTTCACCGTAAACGTCGGCAAGTCCAGGGCACTCG 14476
Query 110575 TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGA 110634
||||||| | || | ||||| ||| | || || | ||||||||| || || |
Sbjct 14477 GCGGGACACATAAGAGTCCAATCCCCATCGGATTCGACACGCTTCATGAAAAGATCGGAG 14536
Query 110635 ATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGT 110694
||||| | || ||||||| ||||| || |||| || | ||| ||||| | |
Sbjct 14537 ATCCAGAGGGCGTAGAAAAGATCACGAGCTCGTACCTCCTCCTTACCATGGTTCTTCCTT 14596
Query 110695 AGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCC 110754
| || | ||||| | | ||| | |||||| || || ||||||| |||| || ||
Sbjct 14597 AAGTCAATGAAGTCAAATACATCAGCGTGCCAAGGCTCAAGATAGATGGCGAAGGCACC- 14655
Query 110755 TTACGACG------ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGC 110808
| |||| ||| | || | ||| || || |||||||| | | | | | ||||
Sbjct 14656 --AGGACGCTTGTTACCACCTTGATCAACGTATCGAGCTGTGGCGTCGTAAGCTCGGAGC 14713
Query 110809 ATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGA 110868
|||||||| || || | ||| | |||||| ||||| ||| ||| || |||||
Sbjct 14714 ATAGGAATGATGCCGTTGGAGTAACCATTGGTACCGGCAATGTAGGAGCCCTTCGCACGG 14773
Query 110869 ATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGT 110927
|| | ||| || || | |||||||||||| || ||| || || ||||| ||| |
Sbjct 14774 ATATTGTGAATGTGAAGACCAATACCACCGGCAGTCTTGGAGATCTGAGCACAGGTCT-T 14832
Query 110928 GAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGA 110987
||| ||| | || ||||||||||| || || |||| |||| | || ||||| || ||
Sbjct 14833 GAGAGTATCGTAGATACCATCAATGGAGTCATCCTTCATGGCCACGAGGAAGCATGATGA 14892
Query 110988 CATCTGAGGACGAGGCGTTCCCGCATTGAAGAG 111020
||| || || || || || || || ||||| ||
Sbjct 14893 CATTTGGGGTCGGGGAGTACCGGCGTTGAAAAG 14925
>seq9
Length=10661
Score = 100 bits (110), Expect = 3e-16
Identities = 286/433 (66%), Gaps = 14/433 (3%)
Strand=Plus/Minus
Query 167358 ACCCGTACCAATACCTTCAGTACCGTTTACCAAAACCATCGGTAGAGTTGGCATGTAAAA 167417
||| ||||| ||||| || | ||| || | ||| ||||| || | || |||||| || |
Sbjct 7900 ACCAGTACCGATACCATCTGCACCATTGATCAATACCATTGGAACGGTGGGCATGAAATA 7841
Query 167418 GTCGGGTTCAATGGAACGACCATCATCATCCAAGTAGTTGAGAATGGCATCATCTTTGGG 167477
|| ||||||||| |||||| || ||||||||||||| | | |||||| ||
Sbjct 7840 ATCTGGTTCAATGCGCATACCATCCTCGACCAAGTAGTTGAGCAACCCGTCATCTGCAGG 7781
Query 167478 ATCGAAGAGCTTTCGAGCC-TCCTTGGTAAGCTTCGTAAAGATGTACCTCGTCTGAGACG 167536
| ||||| ||||| | ||| ||| ||| || || ||||| || | | || |
Sbjct 7780 GTGGAAGATTGCTCGAGTCATCCGTGG-AAGGTTTGTGAAGATATAACGAGCAGAAGCTG 7722
Query 167537 CATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGT 167596
| || || ||||| || || ||||||||||| || || || || ||||||||||
Sbjct 7721 CGTCTTTACCACCTGCAAGACGAGTACCAAATTGGCCGTTGGGATCCAGCAGATTGATGT 7662
Query 167597 TATTCGAC-CCCGTATAATCGTTG-GCCAACTTGACGATCGTTTCAGCGAGGGAAA---- 167650
| || || ||| || ||| || || ||| || || | || |||
Sbjct 7661 TGTT--ACTGCCGACGAAGTTTTGTGCTAAACCGACAATGGT----GGAAGTCAAACTGG 7608
Query 167651 CTTCGCCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCA 167710
|||| || ||||| || || | || || | || || | || | ||| || ||||| |
Sbjct 7607 CTTCACCATGGTGATATGCGGTTTTCTCCGAAACGTAGCCGGCAAGCTGAGCGACCTTGA 7548
Query 167711 TCTCATCTTTGAGATTCTTTTGGAAACATGAATACATAACCTTGCGTTGAGAAGGTTTGA 167770
| || | |||| || | |||||| | | | |||||| || ||| ||||||||
Sbjct 7547 TTTCTTTGGTGAGGTTTCGCTTGAAACAACCAAAGAGAACCTTTCGCTGACCAGGTTTGA 7488
Query 167771 GACCATCTGCCAC 167783
|||| || |||||
Sbjct 7487 GACCGTCGGCCAC 7475
>seq1
Length=728537
Score = 93.3 bits (102), Expect = 5e-14
Identities = 146/207 (71%), Gaps = 9/207 (4%)
Strand=Plus/Plus
Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554
|||||| || || || || || || |||||||||||||| ||| |||| || ||
Sbjct 440823 GGCAAAGTCGGTGTGGAGACCCTCGTCTCGAGAGATGAGCTCGTTAGAGAAGGTGAGACC 440882
Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614
||||||||| |||| ||||| ||||| ||||||| ||| ||||| ||||||||
Sbjct 440883 AGGCATGAGACCTCGCTTCTTAAGCCAGAAGATGGACGCGAAAGAACCAGAGAAGAAGAT 440942
Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTC--- 119668
|||||||| || ||||| | || ||||| | ||| | ||| || |||
Sbjct 440943 ACCCTCCACGGCAGCAAAAGCAATGAGTCGCTCGCCGAAA---CAAGATTTTTGGTCAGA 440999
Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTT 119695
|| ||| |||||||||| ||||||
Sbjct 441000 GATCCATCGAAGAGCCCAGTCGGCCTT 441026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588969388744400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |